BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

285 related articles for article (PubMed ID: 34753956)

  • 1. Whole genome and exome sequencing reference datasets from a multi-center and cross-platform benchmark study.
    Zhao Y; Fang LT; Shen TW; Choudhari S; Talsania K; Chen X; Shetty J; Kriga Y; Tran B; Zhu B; Chen Z; Chen W; Wang C; Jaeger E; Meerzaman D; Lu C; Idler K; Ren L; Zheng Y; Shi L; Petitjean V; Sultan M; Hung T; Peters E; Drabek J; Vojta P; Maestro R; Gasparotto D; Kõks S; Reimann E; Scherer A; Nordlund J; Liljedahl U; Foox J; Mason CE; Xiao C; Hong H; Xiao W
    Sci Data; 2021 Nov; 8(1):296. PubMed ID: 34753956
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Toward best practice in cancer mutation detection with whole-genome and whole-exome sequencing.
    Xiao W; Ren L; Chen Z; Fang LT; Zhao Y; Lack J; Guan M; Zhu B; Jaeger E; Kerrigan L; Blomquist TM; Hung T; Sultan M; Idler K; Lu C; Scherer A; Kusko R; Moos M; Xiao C; Sherry ST; Abaan OD; Chen W; Chen X; Nordlund J; Liljedahl U; Maestro R; Polano M; Drabek J; Vojta P; Kõks S; Reimann E; Madala BS; Mercer T; Miller C; Jacob H; Truong T; Moshrefi A; Natarajan A; Granat A; Schroth GP; Kalamegham R; Peters E; Petitjean V; Walton A; Shen TW; Talsania K; Vera CJ; Langenbach K; de Mars M; Hipp JA; Willey JC; Wang J; Shetty J; Kriga Y; Raziuddin A; Tran B; Zheng Y; Yu Y; Cam M; Jailwala P; Nguyen C; Meerzaman D; Chen Q; Yan C; Ernest B; Mehra U; Jensen RV; Jones W; Li JL; Papas BN; Pirooznia M; Chen YC; Seifuddin F; Li Z; Liu X; Resch W; Wang J; Wu L; Yavas G; Miles C; Ning B; Tong W; Mason CE; Donaldson E; Lababidi S; Staudt LM; Tezak Z; Hong H; Wang C; Shi L
    Nat Biotechnol; 2021 Sep; 39(9):1141-1150. PubMed ID: 34504346
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Validated WGS and WES protocols proved saliva-derived gDNA as an equivalent to blood-derived gDNA for clinical and population genomic analyses.
    Kvapilova K; Misenko P; Radvanszky J; Brzon O; Budis J; Gazdarica J; Pos O; Korabecna M; Kasny M; Szemes T; Kvapil P; Paces J; Kozmik Z
    BMC Genomics; 2024 Feb; 25(1):187. PubMed ID: 38365587
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing.
    Fang LT; Zhu B; Zhao Y; Chen W; Yang Z; Kerrigan L; Langenbach K; de Mars M; Lu C; Idler K; Jacob H; Zheng Y; Ren L; Yu Y; Jaeger E; Schroth GP; Abaan OD; Talsania K; Lack J; Shen TW; Chen Z; Stanbouly S; Tran B; Shetty J; Kriga Y; Meerzaman D; Nguyen C; Petitjean V; Sultan M; Cam M; Mehta M; Hung T; Peters E; Kalamegham R; Sahraeian SME; Mohiyuddin M; Guo Y; Yao L; Song L; Lam HYK; Drabek J; Vojta P; Maestro R; Gasparotto D; Kõks S; Reimann E; Scherer A; Nordlund J; Liljedahl U; Jensen RV; Pirooznia M; Li Z; Xiao C; Sherry ST; Kusko R; Moos M; Donaldson E; Tezak Z; Ning B; Tong W; Li J; Duerken-Hughes P; Catalanotti C; Maheshwari S; Shuga J; Liang WS; Keats J; Adkins J; Tassone E; Zismann V; McDaniel T; Trent J; Foox J; Butler D; Mason CE; Hong H; Shi L; Wang C; Xiao W;
    Nat Biotechnol; 2021 Sep; 39(9):1151-1160. PubMed ID: 34504347
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Improving somatic exome sequencing performance by biological replicates.
    Cebeci YE; Erturk RA; Ergun MA; Baysan M
    BMC Bioinformatics; 2024 Mar; 25(1):124. PubMed ID: 38519906
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Systematic benchmark of state-of-the-art variant calling pipelines identifies major factors affecting accuracy of coding sequence variant discovery.
    Barbitoff YA; Abasov R; Tvorogova VE; Glotov AS; Predeus AV
    BMC Genomics; 2022 Feb; 23(1):155. PubMed ID: 35193511
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Comparison of actionable events detected in cancer genomes by whole-genome sequencing, in silico whole-exome and mutation panels.
    Ramarao-Milne P; Kondrashova O; Patch AM; Nones K; Koufariotis LT; Newell F; Addala V; Lakis V; Holmes O; Leonard C; Wood S; Xu Q; Mukhopadhyay P; Naeini MM; Steinfort D; Williamson JP; Bint M; Pahoff C; Nguyen PT; Twaddell S; Arnold D; Grainge C; Basirzadeh F; Fielding D; Dalley AJ; Chittoory H; Simpson PT; Aoude LG; Bonazzi VF; Patel K; Barbour AP; Fennell DA; Robinson BW; Creaney J; Hollway G; Pearson JV; Waddell N
    ESMO Open; 2022 Aug; 7(4):100540. PubMed ID: 35849877
    [TBL] [Abstract][Full Text] [Related]  

  • 8. JWES: a new pipeline for whole genome/exome sequence data processing, management, and gene-variant discovery, annotation, prediction, and genotyping.
    Ahmed Z; Renart EG; Mishra D; Zeeshan S
    FEBS Open Bio; 2021 Sep; 11(9):2441-2452. PubMed ID: 34370400
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Retrospective evaluation of whole exome and genome mutation calls in 746 cancer samples.
    Bailey MH; Meyerson WU; Dursi LJ; Wang LB; Dong G; Liang WW; Weerasinghe A; Li S; Li Y; Kelso S; ; ; Saksena G; Ellrott K; Wendl MC; Wheeler DA; Getz G; Simpson JT; Gerstein MB; Ding L;
    Nat Commun; 2020 Sep; 11(1):4748. PubMed ID: 32958763
    [TBL] [Abstract][Full Text] [Related]  

  • 10. ALPHLARD: a Bayesian method for analyzing HLA genes from whole genome sequence data.
    Hayashi S; Yamaguchi R; Mizuno S; Komura M; Miyano S; Nakagawa H; Imoto S
    BMC Genomics; 2018 Nov; 19(1):790. PubMed ID: 30384854
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Systematic comparison of germline variant calling pipelines cross multiple next-generation sequencers.
    Chen J; Li X; Zhong H; Meng Y; Du H
    Sci Rep; 2019 Jun; 9(1):9345. PubMed ID: 31249349
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Next-generation sequencing in the clinic: promises and challenges.
    Xuan J; Yu Y; Qing T; Guo L; Shi L
    Cancer Lett; 2013 Nov; 340(2):284-95. PubMed ID: 23174106
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A pilot precision medicine trial for children with diffuse intrinsic pontine glioma-PNOC003: A report from the Pacific Pediatric Neuro-Oncology Consortium.
    Mueller S; Jain P; Liang WS; Kilburn L; Kline C; Gupta N; Panditharatna E; Magge SN; Zhang B; Zhu Y; Crawford JR; Banerjee A; Nazemi K; Packer RJ; Petritsch CK; Truffaux N; Roos A; Nasser S; Phillips JJ; Solomon D; Molinaro A; Waanders AJ; Byron SA; Berens ME; Kuhn J; Nazarian J; Prados M; Resnick AC
    Int J Cancer; 2019 Oct; 145(7):1889-1901. PubMed ID: 30861105
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Systematic comparison of variant calling pipelines of target genome sequencing cross multiple next-generation sequencers.
    Feng B; Lai J; Fan X; Liu Y; Wang M; Wu P; Zhou Z; Yan Q; Sun L
    Front Genet; 2023; 14():1293974. PubMed ID: 38239851
    [TBL] [Abstract][Full Text] [Related]  

  • 15. A comparative assessment of clinical whole exome and transcriptome profiling across sequencing centers: implications for precision cancer medicine.
    Van Allen EM; Robinson D; Morrissey C; Pritchard C; Imamovic A; Carter S; Rosenberg M; McKenna A; Wu YM; Cao X; Chinnaiyan A; Garraway L; Nelson PS
    Oncotarget; 2016 Aug; 7(33):52888-52899. PubMed ID: 27167109
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Deep whole-genome sequencing of 3 cancer cell lines on 2 sequencing platforms.
    Arora K; Shah M; Johnson M; Sanghvi R; Shelton J; Nagulapalli K; Oschwald DM; Zody MC; Germer S; Jobanputra V; Carter J; Robine N
    Sci Rep; 2019 Dec; 9(1):19123. PubMed ID: 31836783
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Whole genome sequencing analysis for cancer genomics and precision medicine.
    Nakagawa H; Fujita M
    Cancer Sci; 2018 Mar; 109(3):513-522. PubMed ID: 29345757
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Extensive sequencing of seven human genomes to characterize benchmark reference materials.
    Zook JM; Catoe D; McDaniel J; Vang L; Spies N; Sidow A; Weng Z; Liu Y; Mason CE; Alexander N; Henaff E; McIntyre AB; Chandramohan D; Chen F; Jaeger E; Moshrefi A; Pham K; Stedman W; Liang T; Saghbini M; Dzakula Z; Hastie A; Cao H; Deikus G; Schadt E; Sebra R; Bashir A; Truty RM; Chang CC; Gulbahce N; Zhao K; Ghosh S; Hyland F; Fu Y; Chaisson M; Xiao C; Trow J; Sherry ST; Zaranek AW; Ball M; Bobe J; Estep P; Church GM; Marks P; Kyriazopoulou-Panagiotopoulou S; Zheng GX; Schnall-Levin M; Ordonez HS; Mudivarti PA; Giorda K; Sheng Y; Rypdal KB; Salit M
    Sci Data; 2016 Jun; 3():160025. PubMed ID: 27271295
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Archived neonatal dried blood spot samples can be used for accurate whole genome and exome-targeted next-generation sequencing.
    Hollegaard MV; Grauholm J; Nielsen R; Grove J; Mandrup S; Hougaard DM
    Mol Genet Metab; 2013; 110(1-2):65-72. PubMed ID: 23830478
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Accuracy and efficiency of germline variant calling pipelines for human genome data.
    Zhao S; Agafonov O; Azab A; Stokowy T; Hovig E
    Sci Rep; 2020 Nov; 10(1):20222. PubMed ID: 33214604
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 15.