178 related articles for article (PubMed ID: 34757736)
21. Eugene--a domain specific language for specifying and constraining synthetic biological parts, devices, and systems.
Bilitchenko L; Liu A; Cheung S; Weeding E; Xia B; Leguia M; Anderson JC; Densmore D
PLoS One; 2011 Apr; 6(4):e18882. PubMed ID: 21559524
[TBL] [Abstract][Full Text] [Related]
22. Automated assembly of standard biological parts.
Leguia M; Brophy J; Densmore D; Anderson JC
Methods Enzymol; 2011; 498():363-97. PubMed ID: 21601686
[TBL] [Abstract][Full Text] [Related]
23. SynBioSuite: A Tool for Improving the Workflow for Genetic Design and Modeling.
Sents Z; Stoughton TE; Buecherl L; Thomas PJ; Fontanarrosa P; Myers CJ
ACS Synth Biol; 2023 Mar; 12(3):892-897. PubMed ID: 36888740
[TBL] [Abstract][Full Text] [Related]
24. An Automated Biomodel Selection System (BMSS) for Gene Circuit Designs.
Yeoh JW; Ng KBI; Teh AY; Zhang J; Chee WKD; Poh CL
ACS Synth Biol; 2019 Jul; 8(7):1484-1497. PubMed ID: 31035759
[TBL] [Abstract][Full Text] [Related]
25. In silico implementation of synthetic gene networks.
Marchisio MA
Methods Mol Biol; 2012; 813():3-21. PubMed ID: 22083733
[TBL] [Abstract][Full Text] [Related]
26. Synthetic Biology Open Language (SBOL) Version 2.2.0.
Cox RS; Madsen C; McLaughlin JA; Nguyen T; Roehner N; Bartley B; Beal J; Bissell M; Choi K; Clancy K; Grünberg R; Macklin C; Misirli G; Oberortner E; Pocock M; Samineni M; Zhang M; Zhang Z; Zundel Z; Gennari JH; Myers C; Sauro H; Wipat A
J Integr Bioinform; 2018 Apr; 15(1):. PubMed ID: 29605823
[TBL] [Abstract][Full Text] [Related]
27. GeNeDA: An Open-Source Workflow for Design Automation of Gene Regulatory Networks Inspired from Microelectronics.
Madec M; Pecheux F; Gendrault Y; Rosati E; Lallement C; Haiech J
J Comput Biol; 2016 Oct; 23(10):841-55. PubMed ID: 27322846
[TBL] [Abstract][Full Text] [Related]
28. Tyto: A Python Tool Enabling Better Annotation Practices for Synthetic Biology Data-Sharing.
Bartley BA
ACS Synth Biol; 2022 Mar; 11(3):1373-1376. PubMed ID: 35226470
[TBL] [Abstract][Full Text] [Related]
29. ShortBOL: A Language for Scripting Designs for Engineered Biological Systems Using Synthetic Biology Open Language (SBOL).
Crowther M; Grozinger L; Pocock M; Taylor CPD; McLaughlin JA; Mısırlı G; Bartley BA; Beal J; Goñi-Moreno A; Wipat A
ACS Synth Biol; 2020 Apr; 9(4):962-966. PubMed ID: 32129980
[TBL] [Abstract][Full Text] [Related]
30. Proposed data model for the next version of the synthetic biology open language.
Roehner N; Oberortner E; Pocock M; Beal J; Clancy K; Madsen C; Misirli G; Wipat A; Sauro H; Myers CJ
ACS Synth Biol; 2015 Jan; 4(1):57-71. PubMed ID: 24896221
[TBL] [Abstract][Full Text] [Related]
31. Capturing Multicellular System Designs Using Synthetic Biology Open Language (SBOL).
Brown B; Bartley B; Beal J; Bird JE; Goñi-Moreno Á; McLaughlin JA; Mısırlı G; Roehner N; Skelton DJ; Poh CL; Ofiteru ID; James K; Wipat A
ACS Synth Biol; 2020 Sep; 9(9):2410-2417. PubMed ID: 32786354
[TBL] [Abstract][Full Text] [Related]
32. Genetic design automation: engineering fantasy or scientific renewal?
Lux MW; Bramlett BW; Ball DA; Peccoud J
Trends Biotechnol; 2012 Feb; 30(2):120-6. PubMed ID: 22001068
[TBL] [Abstract][Full Text] [Related]
33. Model annotation for synthetic biology: automating model to nucleotide sequence conversion.
Misirli G; Hallinan JS; Yu T; Lawson JR; Wimalaratne SM; Cooling MT; Wipat A
Bioinformatics; 2011 Apr; 27(7):973-9. PubMed ID: 21296753
[TBL] [Abstract][Full Text] [Related]
34. iBioSim 3: A Tool for Model-Based Genetic Circuit Design.
Watanabe L; Nguyen T; Zhang M; Zundel Z; Zhang Z; Madsen C; Roehner N; Myers C
ACS Synth Biol; 2019 Jul; 8(7):1560-1563. PubMed ID: 29944839
[TBL] [Abstract][Full Text] [Related]
35. DNAplotlib: Programmable Visualization of Genetic Designs and Associated Data.
Der BS; Glassey E; Bartley BA; Enghuus C; Goodman DB; Gordon DB; Voigt CA; Gorochowski TE
ACS Synth Biol; 2017 Jul; 6(7):1115-1119. PubMed ID: 27744689
[TBL] [Abstract][Full Text] [Related]
36. wft4galaxy: a workflow testing tool for galaxy.
Piras ME; Pireddu L; Zanetti G
Bioinformatics; 2017 Dec; 33(23):3805-3807. PubMed ID: 29036536
[TBL] [Abstract][Full Text] [Related]
37. EMMA-CAD: Design Automation for Synthetic Mammalian Constructs.
Luo Y; James JS; Jones S; Martella A; Cai Y
ACS Synth Biol; 2022 Feb; 11(2):579-586. PubMed ID: 35050610
[TBL] [Abstract][Full Text] [Related]
38. Opportunities at the Intersection of Synthetic Biology, Machine Learning, and Automation.
Carbonell P; Radivojevic T; García Martín H
ACS Synth Biol; 2019 Jul; 8(7):1474-1477. PubMed ID: 31319671
[TBL] [Abstract][Full Text] [Related]
39. An evaluation of GO annotation retrieval for BioCreAtIvE and GOA.
Camon EB; Barrell DG; Dimmer EC; Lee V; Magrane M; Maslen J; Binns D; Apweiler R
BMC Bioinformatics; 2005; 6 Suppl 1(Suppl 1):S17. PubMed ID: 15960829
[TBL] [Abstract][Full Text] [Related]
40. Synthetic biology open language (SBOL) version 3.0.0.
Baig H; Fontanarrosa P; Kulkarni V; McLaughlin JA; Vaidyanathan P; Bartley B; Beal J; Crowther M; Gorochowski TE; Grünberg R; Misirli G; Scott-Brown J; Oberortner E; Wipat A; Myers CJ
J Integr Bioinform; 2020 Jun; 17(2-3):. PubMed ID: 32589605
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
