BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

261 related articles for article (PubMed ID: 34758318)

  • 1. Quantifying the regulatory role of individual transcription factors in Escherichia coli.
    Guharajan S; Chhabra S; Parisutham V; Brewster RC
    Cell Rep; 2021 Nov; 37(6):109952. PubMed ID: 34758318
    [TBL] [Abstract][Full Text] [Related]  

  • 2. The influence of promoter architectures and regulatory motifs on gene expression in Escherichia coli.
    Rydenfelt M; Garcia HG; Cox RS; Phillips R
    PLoS One; 2014; 9(12):e114347. PubMed ID: 25549361
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Transcription profile of Escherichia coli: genomic SELEX search for regulatory targets of transcription factors.
    Ishihama A; Shimada T; Yamazaki Y
    Nucleic Acids Res; 2016 Mar; 44(5):2058-74. PubMed ID: 26843427
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Building a complete image of genome regulation in the model organism Escherichia coli.
    Ishihama A
    J Gen Appl Microbiol; 2018 Jan; 63(6):311-324. PubMed ID: 28904250
    [TBL] [Abstract][Full Text] [Related]  

  • 5. From sequence to dynamics: the effects of transcription factor and polymerase concentration changes on activated and repressed promoters.
    Pérez AG; Angarica VE; Collado-Vides J; Vasconcelos AT
    BMC Mol Biol; 2009 Sep; 10():92. PubMed ID: 19772633
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Minor Alterations in Core Promoter Element Positioning Reveal Functional Plasticity of a Bacterial Transcription Factor.
    Chowdhury WP; Satyshur KA; Keck JL; Kiley PJ
    mBio; 2021 Dec; 12(6):e0275321. PubMed ID: 34724814
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Tunable transcription factor library for robust quantification of regulatory properties in Escherichia coli.
    Parisutham V; Chhabra S; Ali MZ; Brewster RC
    Mol Syst Biol; 2022 Jun; 18(6):e10843. PubMed ID: 35694815
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Regulatory properties of transcription factors with diverse mechanistic function.
    Ali MZ; Guharajan S; Parisutham V; Brewster RC
    PLoS Comput Biol; 2024 Jun; 20(6):e1012194. PubMed ID: 38857275
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Integration of regulatory signals through involvement of multiple global regulators: control of the Escherichia coli gltBDF operon by Lrp, IHF, Crp, and ArgR.
    Paul L; Mishra PK; Blumenthal RM; Matthews RG
    BMC Microbiol; 2007 Jan; 7():2. PubMed ID: 17233899
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Coupling of downstream RNA polymerase-promoter interactions with formation of catalytically competent transcription initiation complex.
    Mekler V; Minakhin L; Borukhov S; Mustaev A; Severinov K
    J Mol Biol; 2014 Dec; 426(24):3973-3984. PubMed ID: 25311862
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Temperature effects on RNA polymerase initiation kinetics reveal which open complex initiates and that bubble collapse is stepwise.
    Plaskon DM; Henderson KL; Felth LC; Molzahn CM; Evensen C; Dyke S; Shkel IA; Record MT
    Proc Natl Acad Sci U S A; 2021 Jul; 118(30):. PubMed ID: 34290140
    [TBL] [Abstract][Full Text] [Related]  

  • 12.
    Chou LYT; Shih WM
    ACS Synth Biol; 2019 Nov; 8(11):2558-2565. PubMed ID: 31574217
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Intracellular concentrations of 65 species of transcription factors with known regulatory functions in Escherichia coli.
    Ishihama A; Kori A; Koshio E; Yamada K; Maeda H; Shimada T; Makinoshima H; Iwata A; Fujita N
    J Bacteriol; 2014 Aug; 196(15):2718-27. PubMed ID: 24837290
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Identifying promoter features of co-regulated genes with similar network motifs.
    Harari O; del Val C; Romero-Zaliz R; Shin D; Huang H; Groisman EA; Zwir I
    BMC Bioinformatics; 2009 Apr; 10 Suppl 4(Suppl 4):S1. PubMed ID: 19426448
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Direct detection of abortive RNA transcripts in vivo.
    Goldman SR; Ebright RH; Nickels BE
    Science; 2009 May; 324(5929):927-8. PubMed ID: 19443781
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Effects of DksA, GreA, and GreB on transcription initiation: insights into the mechanisms of factors that bind in the secondary channel of RNA polymerase.
    Rutherford ST; Lemke JJ; Vrentas CE; Gaal T; Ross W; Gourse RL
    J Mol Biol; 2007 Mar; 366(4):1243-57. PubMed ID: 17207814
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Universal functions of the σ finger in alternative σ factors during transcription initiation by bacterial RNA polymerase.
    Oguienko A; Petushkov I; Pupov D; Esyunina D; Kulbachinskiy A
    RNA Biol; 2021 Nov; 18(11):2028-2037. PubMed ID: 33573428
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Mode of action of the TyrR protein: repression and activation of the tyrP promoter of Escherichia coli.
    Yang J; Hwang JS; Camakaris H; Irawaty W; Ishihama A; Pittard J
    Mol Microbiol; 2004 Apr; 52(1):243-56. PubMed ID: 15049824
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Widespread Strain-Specific Distinctions in Chromosomal Binding Dynamics of a Highly Conserved Escherichia coli Transcription Factor.
    Connolly JPR; O'Boyle N; Roe AJ
    mBio; 2020 Jun; 11(3):. PubMed ID: 32576674
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Expression levels of transcription factors in Escherichia coli: growth phase- and growth condition-dependent variation of 90 regulators from six families.
    Yamamoto K; Watanabe H; Ishihama A
    Microbiology (Reading); 2014 Sep; 160(Pt 9):1903-1913. PubMed ID: 25037164
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 14.