220 related articles for article (PubMed ID: 34772337)
1. Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation.
Jiang T; Liu S; Cao S; Liu Y; Cui Z; Wang Y; Guo H
BMC Bioinformatics; 2021 Nov; 22(1):552. PubMed ID: 34772337
[TBL] [Abstract][Full Text] [Related]
2. Benchmarking of structural variant detection in the tetraploid potato genome using linked-read sequencing.
Weisweiler M; Stich B
Genomics; 2023 Mar; 115(2):110568. PubMed ID: 36702293
[TBL] [Abstract][Full Text] [Related]
3. The impact of FASTQ and alignment read order on structural variant calling from long-read sequencing data.
Lesack KJ; Wasmuth JD
PeerJ; 2024; 12():e17101. PubMed ID: 38500526
[TBL] [Abstract][Full Text] [Related]
4. NextSV: a meta-caller for structural variants from low-coverage long-read sequencing data.
Fang L; Hu J; Wang D; Wang K
BMC Bioinformatics; 2018 May; 19(1):180. PubMed ID: 29792160
[TBL] [Abstract][Full Text] [Related]
5. Benchmarking long-read aligners and SV callers for structural variation detection in Oxford nanopore sequencing data.
Helal AA; Saad BT; Saad MT; Mosaad GS; Aboshanab KM
Sci Rep; 2024 Mar; 14(1):6160. PubMed ID: 38486064
[TBL] [Abstract][Full Text] [Related]
6. Correspondence on NanoVar's performance outlined by Jiang T. et al. in "Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation".
Tham CY; Benoukraf T
BMC Bioinformatics; 2023 Sep; 24(1):350. PubMed ID: 37730547
[TBL] [Abstract][Full Text] [Related]
7. Evaluation of Germline Structural Variant Calling Methods for Nanopore Sequencing Data.
Bolognini D; Magi A
Front Genet; 2021; 12():761791. PubMed ID: 34868242
[TBL] [Abstract][Full Text] [Related]
8. Comprehensive evaluation of structural variant genotyping methods based on long-read sequencing data.
Duan X; Pan M; Fan S
BMC Genomics; 2022 Apr; 23(1):324. PubMed ID: 35461238
[TBL] [Abstract][Full Text] [Related]
9. Duet: SNP-assisted structural variant calling and phasing using Oxford nanopore sequencing.
Zhou Y; Leung AW; Ahmed SS; Lam TW; Luo R
BMC Bioinformatics; 2022 Nov; 23(1):465. PubMed ID: 36344913
[TBL] [Abstract][Full Text] [Related]
10. Comparison of structural variant callers for massive whole-genome sequence data.
Joe S; Park JL; Kim J; Kim S; Park JH; Yeo MK; Lee D; Yang JO; Kim SY
BMC Genomics; 2024 Mar; 25(1):318. PubMed ID: 38549092
[TBL] [Abstract][Full Text] [Related]
11. Structural Variant Detection from Long-Read Sequencing Data with cuteSV.
Jiang T; Liu S; Cao S; Wang Y
Methods Mol Biol; 2022; 2493():137-151. PubMed ID: 35751813
[TBL] [Abstract][Full Text] [Related]
12. Evaluating nanopore sequencing data processing pipelines for structural variation identification.
Zhou A; Lin T; Xing J
Genome Biol; 2019 Nov; 20(1):237. PubMed ID: 31727126
[TBL] [Abstract][Full Text] [Related]
13. Reply: Correspondence on NanoVar's performance outlined by Jiang T. et al. in 'Long-read sequencing settings for efficient structural variation detection based on comprehensive evaluation'.
Jiang T; Liu S; Guo H
BMC Bioinformatics; 2023 Sep; 24(1):352. PubMed ID: 37730581
[TBL] [Abstract][Full Text] [Related]
14. Benchmarking datasets for assembly-based variant calling using high-fidelity long reads.
Lee H; Kim J; Lee J
BMC Genomics; 2023 Mar; 24(1):148. PubMed ID: 36973656
[TBL] [Abstract][Full Text] [Related]
15. SVachra: a tool to identify genomic structural variation in mate pair sequencing data containing inward and outward facing reads.
Hampton OA; English AC; Wang M; Salerno WJ; Liu Y; Muzny DM; Han Y; Wheeler DA; Worley KC; Lupski JR; Gibbs RA
BMC Genomics; 2017 Oct; 18(Suppl 6):691. PubMed ID: 28984202
[TBL] [Abstract][Full Text] [Related]
16. Benchmarking Oxford Nanopore read alignment-based insertion and deletion detection in crop plant genomes.
Yildiz G; Zanini SF; Afsharyan NP; Obermeier C; Snowdon RJ; Golicz AA
Plant Genome; 2023 Jun; 16(2):e20314. PubMed ID: 36988043
[TBL] [Abstract][Full Text] [Related]
17. PanSVR: Pan-Genome Augmented Short Read Realignment for Sensitive Detection of Structural Variations.
Li G; Jiang T; Li J; Wang Y
Front Genet; 2021; 12():731515. PubMed ID: 34490049
[TBL] [Abstract][Full Text] [Related]
18. Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology.
Lemay MA; Sibbesen JA; Torkamaneh D; Hamel J; Levesque RC; Belzile F
BMC Biol; 2022 Feb; 20(1):53. PubMed ID: 35197050
[TBL] [Abstract][Full Text] [Related]
19. Hidden biases in germline structural variant detection.
Khayat MM; Sahraeian SME; Zarate S; Carroll A; Hong H; Pan B; Shi L; Gibbs RA; Mohiyuddin M; Zheng Y; Sedlazeck FJ
Genome Biol; 2021 Dec; 22(1):347. PubMed ID: 34930391
[TBL] [Abstract][Full Text] [Related]
20. Comparison and benchmark of structural variants detected from long read and long-read assembly.
Lin J; Jia P; Wang S; Kosters W; Ye K
Brief Bioinform; 2023 Jul; 24(4):. PubMed ID: 37200087
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]