These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

193 related articles for article (PubMed ID: 34779765)

  • 1. Bacterial genomic epidemiology with mixed samples.
    Mäklin T; Kallonen T; Alanko J; Samuelsen Ø; Hegstad K; Mäkinen V; Corander J; Heinz E; Honkela A
    Microb Genom; 2021 Nov; 7(11):. PubMed ID: 34779765
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Themisto: a scalable colored k-mer index for sensitive pseudoalignment against hundreds of thousands of bacterial genomes.
    Alanko JN; Vuohtoniemi J; Mäklin T; Puglisi SJ
    Bioinformatics; 2023 Jun; 39(39 Suppl 1):i260-i269. PubMed ID: 37387143
    [TBL] [Abstract][Full Text] [Related]  

  • 3. PathoSPOT genomic epidemiology reveals under-the-radar nosocomial outbreaks.
    Berbel Caban A; Pak TR; Obla A; Dupper AC; Chacko KI; Fox L; Mills A; Ciferri B; Oussenko I; Beckford C; Chung M; Sebra R; Smith M; Conolly S; Patel G; Kasarskis A; Sullivan MJ; Altman DR; van Bakel H
    Genome Med; 2020 Nov; 12(1):96. PubMed ID: 33198787
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Completion of draft bacterial genomes by long-read sequencing of synthetic genomic pools.
    Derakhshani H; Bernier SP; Marko VA; Surette MG
    BMC Genomics; 2020 Jul; 21(1):519. PubMed ID: 32727443
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Benchmarking Long-Read Assemblers for Genomic Analyses of Bacterial Pathogens Using Oxford Nanopore Sequencing.
    Chen Z; Erickson DL; Meng J
    Int J Mol Sci; 2020 Dec; 21(23):. PubMed ID: 33271875
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Toward a Global Genomic Epidemiology of Meningococcal Disease.
    Retchless AC; Fox LM; Maiden MCJ; Smith V; Harrison LH; Glennie L; Harrison OB; Wang X
    J Infect Dis; 2019 Oct; 220(220 Suppl 4):S266-S273. PubMed ID: 31671445
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Whole-genome epidemiology, characterisation, and phylogenetic reconstruction of Staphylococcus aureus strains in a paediatric hospital.
    Manara S; Pasolli E; Dolce D; Ravenni N; Campana S; Armanini F; Asnicar F; Mengoni A; Galli L; Montagnani C; Venturini E; Rota-Stabelli O; Grandi G; Taccetti G; Segata N
    Genome Med; 2018 Nov; 10(1):82. PubMed ID: 30424799
    [TBL] [Abstract][Full Text] [Related]  

  • 8. The Evolutionary Trend and Genomic Features of an Emerging Lineage of Elizabethkingia anophelis Strains in Taiwan.
    Lee YL; Liu KM; Chang HL; Liao YC; Lin JS; Kung FY; Ho CM; Lin KH; Chen YT
    Microbiol Spectr; 2022 Feb; 10(1):e0168221. PubMed ID: 35044198
    [TBL] [Abstract][Full Text] [Related]  

  • 9. rMAP: the Rapid Microbial Analysis Pipeline for ESKAPE bacterial group whole-genome sequence data.
    Sserwadda I; Mboowa G
    Microb Genom; 2021 Jun; 7(6):. PubMed ID: 34110280
    [TBL] [Abstract][Full Text] [Related]  

  • 10. The global dissemination of bacterial infections necessitates the study of reverse genomic epidemiology.
    Ruan Z; Yu Y; Feng Y
    Brief Bioinform; 2020 Mar; 21(2):741-750. PubMed ID: 30715167
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Benchmarking hybrid assembly approaches for genomic analyses of bacterial pathogens using Illumina and Oxford Nanopore sequencing.
    Chen Z; Erickson DL; Meng J
    BMC Genomics; 2020 Sep; 21(1):631. PubMed ID: 32928108
    [TBL] [Abstract][Full Text] [Related]  

  • 12. An implementation science approach to evaluating pathogen whole genome sequencing in public health.
    Ferdinand AS; Kelaher M; Lane CR; da Silva AG; Sherry NL; Ballard SA; Andersson P; Hoang T; Denholm JT; Easton M; Howden BP; Williamson DA
    Genome Med; 2021 Jul; 13(1):121. PubMed ID: 34321076
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Complete nontuberculous mycobacteria whole genomes using an optimized DNA extraction protocol for long-read sequencing.
    Bouso JM; Planet PJ
    BMC Genomics; 2019 Oct; 20(1):793. PubMed ID: 31666009
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Ongoing evolution of
    Seth-Smith HMB; Bénard A; Bruisten SM; Versteeg B; Herrmann B; Kok J; Carter I; Peuchant O; Bébéar C; Lewis DA; Puerta T; Keše D; Balla E; Zákoucká H; Rob F; Morré SA; de Barbeyrac B; Galán JC; de Vries HJC; Thomson NR; Goldenberger D; Egli A
    Microb Genom; 2021 Jun; 7(6):. PubMed ID: 34184981
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Use of Whole-Genome Sequencing of Adenovirus in Immunocompromised Pediatric Patients to Identify Nosocomial Transmission and Mixed-Genotype Infection.
    Houldcroft CJ; Roy S; Morfopoulou S; Margetts BK; Depledge DP; Cudini J; Shah D; Brown JR; Romero EY; Williams R; Cloutman-Green E; Rao K; Standing JF; Hartley JC; Breuer J
    J Infect Dis; 2018 Sep; 218(8):1261-1271. PubMed ID: 29917114
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Gen2Epi: an automated whole-genome sequencing pipeline for linking full genomes to antimicrobial susceptibility and molecular epidemiological data in Neisseria gonorrhoeae.
    Singh R; Dillon JR; Demczuk W; Kusalik A
    BMC Genomics; 2019 Mar; 20(1):165. PubMed ID: 30832565
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Using Genomics To Investigate an Outbreak of Vancomycin-Resistant Enterococcus faecium ST78 at a Large Tertiary Hospital in Queensland.
    Permana B; Harris PNA; Runnegar N; Lindsay M; Henderson BC; Playford EG; Paterson DL; Beatson SA; Forde BM
    Microbiol Spectr; 2023 Jun; 11(3):e0420422. PubMed ID: 37191518
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comparison of routine field epidemiology and whole genome sequencing to identify tuberculosis transmission in a remote setting.
    Guthrie JL; Strudwick L; Roberts B; Allen M; McFadzen J; Roth D; Jorgensen D; Rodrigues M; Tang P; Hanley B; Johnston J; Cook VJ; Gardy JL
    Epidemiol Infect; 2020 Feb; 148():e15. PubMed ID: 32014080
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Completing bacterial genome assemblies with multiplex MinION sequencing.
    Wick RR; Judd LM; Gorrie CL; Holt KE
    Microb Genom; 2017 Oct; 3(10):e000132. PubMed ID: 29177090
    [TBL] [Abstract][Full Text] [Related]  

  • 20. A multisite genomic epidemiology study of
    Miles-Jay A; Young VB; Pamer EG; Savidge TC; Kamboj M; Garey KW; Snitkin ES
    Microb Genom; 2021 Jun; 7(6):. PubMed ID: 34180789
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 10.