170 related articles for article (PubMed ID: 34781105)
1. Perspective on taxonomic classification of uncultivated viruses.
Dutilh BE; Varsani A; Tong Y; Simmonds P; Sabanadzovic S; Rubino L; Roux S; Muñoz AR; Lood C; Lefkowitz EJ; Kuhn JH; Krupovic M; Edwards RA; Brister JR; Adriaenssens EM; Sullivan MB
Curr Opin Virol; 2021 Dec; 51():207-215. PubMed ID: 34781105
[TBL] [Abstract][Full Text] [Related]
2. The genomic underpinnings of eukaryotic virus taxonomy: creating a sequence-based framework for family-level virus classification.
Aiewsakun P; Simmonds P
Microbiome; 2018 Feb; 6(1):38. PubMed ID: 29458427
[TBL] [Abstract][Full Text] [Related]
3. Taxonomic assignment of uncultivated prokaryotic virus genomes is enabled by gene-sharing networks.
Bin Jang H; Bolduc B; Zablocki O; Kuhn JH; Roux S; Adriaenssens EM; Brister JR; Kropinski AM; Krupovic M; Lavigne R; Turner D; Sullivan MB
Nat Biotechnol; 2019 Jun; 37(6):632-639. PubMed ID: 31061483
[TBL] [Abstract][Full Text] [Related]
4. The new scope of virus taxonomy: partitioning the virosphere into 15 hierarchical ranks.
International Committee on Taxonomy of Viruses Executive Committee
Nat Microbiol; 2020 May; 5(5):668-674. PubMed ID: 32341570
[TBL] [Abstract][Full Text] [Related]
5. Expanding the RNA Virosphere by Unbiased Metagenomics.
Zhang YZ; Chen YM; Wang W; Qin XC; Holmes EC
Annu Rev Virol; 2019 Sep; 6(1):119-139. PubMed ID: 31100994
[TBL] [Abstract][Full Text] [Related]
6. Assessing viral taxonomic composition in benthic marine ecosystems: reliability and efficiency of different bioinformatic tools for viral metagenomic analyses.
Tangherlini M; Dell'Anno A; Zeigler Allen L; Riccioni G; Corinaldesi C
Sci Rep; 2016 Jun; 6():28428. PubMed ID: 27329207
[TBL] [Abstract][Full Text] [Related]
7. Using Metagenomics to Characterize an Expanding Virosphere.
Zhang YZ; Shi M; Holmes EC
Cell; 2018 Mar; 172(6):1168-1172. PubMed ID: 29522738
[TBL] [Abstract][Full Text] [Related]
8. VirusTaxo: Taxonomic classification of viruses from the genome sequence using k-mer enrichment.
Raju RS; Al Nahid A; Chondrow Dev P; Islam R
Genomics; 2022 Jul; 114(4):110414. PubMed ID: 35718090
[TBL] [Abstract][Full Text] [Related]
9. Consensus statement: Virus taxonomy in the age of metagenomics.
Simmonds P; Adams MJ; Benkő M; Breitbart M; Brister JR; Carstens EB; Davison AJ; Delwart E; Gorbalenya AE; Harrach B; Hull R; King AM; Koonin EV; Krupovic M; Kuhn JH; Lefkowitz EJ; Nibert ML; Orton R; Roossinck MJ; Sabanadzovic S; Sullivan MB; Suttle CA; Tesh RB; van der Vlugt RA; Varsani A; Zerbini FM
Nat Rev Microbiol; 2017 Mar; 15(3):161-168. PubMed ID: 28134265
[TBL] [Abstract][Full Text] [Related]
10. Solving the species problem in viral taxonomy: recommendations on non-Latinized binomial species names and on abandoning attempts to assign metagenomic viral sequences to species taxa.
Van Regenmortel MHV
Arch Virol; 2019 Sep; 164(9):2223-2229. PubMed ID: 31209597
[TBL] [Abstract][Full Text] [Related]
11. Meta-transcriptomics and the evolutionary biology of RNA viruses.
Shi M; Zhang YZ; Holmes EC
Virus Res; 2018 Jan; 243():83-90. PubMed ID: 29111455
[TBL] [Abstract][Full Text] [Related]
12. Methods for virus classification and the challenge of incorporating metagenomic sequence data.
Simmonds P
J Gen Virol; 2015 Jun; 96(Pt 6):1193-1206. PubMed ID: 26068186
[TBL] [Abstract][Full Text] [Related]
13. Metagenomics reshapes the concepts of RNA virus evolution by revealing extensive horizontal virus transfer.
Dolja VV; Koonin EV
Virus Res; 2018 Jan; 244():36-52. PubMed ID: 29103997
[TBL] [Abstract][Full Text] [Related]
14. Bioinformatics of virus taxonomy: foundations and tools for developing sequence-based hierarchical classification.
Gorbalenya AE; Lauber C
Curr Opin Virol; 2022 Feb; 52():48-56. PubMed ID: 34883443
[TBL] [Abstract][Full Text] [Related]
15. Viral taxonomy: The effect of metagenomics on understanding the diversity and evolution of viruses.
Hunter P
EMBO Rep; 2017 Oct; 18(10):1693-1696. PubMed ID: 28877930
[TBL] [Abstract][Full Text] [Related]
16. Expansion of the metazoan virosphere: progress, pitfalls, and prospects.
Obbard DJ
Curr Opin Virol; 2018 Aug; 31():17-23. PubMed ID: 30237139
[TBL] [Abstract][Full Text] [Related]
17. Megataxonomy and global ecology of the virosphere.
Koonin EV; Kuhn JH; Dolja VV; Krupovic M
ISME J; 2024 Jan; 18(1):. PubMed ID: 38365236
[TBL] [Abstract][Full Text] [Related]
18. Machine Learning for detection of viral sequences in human metagenomic datasets.
Bzhalava Z; Tampuu A; Bała P; Vicente R; Dillner J
BMC Bioinformatics; 2018 Sep; 19(1):336. PubMed ID: 30249176
[TBL] [Abstract][Full Text] [Related]
19.
Callanan J; Stockdale SR; Adriaenssens EM; Kuhn JH; Rumnieks J; Pallen MJ; Shkoporov AN; Draper LA; Ross RP; Hill C
Microb Genom; 2021 Nov; 7(11):. PubMed ID: 34747690
[TBL] [Abstract][Full Text] [Related]
20. Bioinformatic Approaches for Comparative Analysis of Viruses.
Amgarten D; Upton C
Methods Mol Biol; 2018; 1704():401-417. PubMed ID: 29277875
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
