BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

111 related articles for article (PubMed ID: 34791064)

  • 1. COBREXA.jl: constraint-based reconstruction and exascale analysis.
    Kratochvíl M; Heirendt L; Wilken SE; Pusa T; Arreckx S; Noronha A; van Aalst M; Satagopam VP; Ebenhöh O; Schneider R; Trefois C; Gu W
    Bioinformatics; 2022 Jan; 38(4):1171-1172. PubMed ID: 34791064
    [TBL] [Abstract][Full Text] [Related]  

  • 2. GeneticsMakie.jl: a versatile and scalable toolkit for visualizing locus-level genetic and genomic data.
    Kim M; Vo DD; Kumagai ME; Jops CT; Gandal MJ
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36495218
    [TBL] [Abstract][Full Text] [Related]  

  • 3. HyperGraphs.jl: representing higher-order relationships in Julia.
    Diaz LPM; Stumpf MPH
    Bioinformatics; 2022 Jul; 38(14):3660-3661. PubMed ID: 35674360
    [TBL] [Abstract][Full Text] [Related]  

  • 4. DistributedFBA.jl: high-level, high-performance flux balance analysis in Julia.
    Heirendt L; Thiele I; Fleming RMT
    Bioinformatics; 2017 May; 33(9):1421-1423. PubMed ID: 28453682
    [TBL] [Abstract][Full Text] [Related]  

  • 5. BioProfiling.jl: profiling biological perturbations with high-content imaging in single cells and heterogeneous populations.
    Vulliard L; Hancock J; Kamnev A; Fell CW; Ferreira da Silva J; Loizou JI; Nagy V; Dupré L; Menche J
    Bioinformatics; 2022 Mar; 38(6):1692-1699. PubMed ID: 34935929
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CellularPotts.jl: simulating multiscale cellular models in Julia.
    Gregg RW; Benos PV
    Bioinformatics; 2024 Jan; 40(1):. PubMed ID: 38134421
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MRIReco.jl: An MRI reconstruction framework written in Julia.
    Knopp T; Grosser M
    Magn Reson Med; 2021 Sep; 86(3):1633-1646. PubMed ID: 33817833
    [TBL] [Abstract][Full Text] [Related]  

  • 8. BioStructures.jl: read, write and manipulate macromolecular structures in Julia.
    Greener JG; Selvaraj J; Ward BJ
    Bioinformatics; 2020 Aug; 36(14):4206-4207. PubMed ID: 32407511
    [TBL] [Abstract][Full Text] [Related]  

  • 9. clustermq enables efficient parallelization of genomic analyses.
    Schubert M
    Bioinformatics; 2019 Nov; 35(21):4493-4495. PubMed ID: 31134271
    [TBL] [Abstract][Full Text] [Related]  

  • 10. GigaSOM.jl: High-performance clustering and visualization of huge cytometry datasets.
    Kratochvíl M; Hunewald O; Heirendt L; Verissimo V; Vondrášek J; Satagopam VP; Schneider R; Trefois C; Ollert M
    Gigascience; 2020 Nov; 9(11):. PubMed ID: 33205814
    [TBL] [Abstract][Full Text] [Related]  

  • 11. CloudPhylo: a fast and scalable tool for phylogeny reconstruction.
    Xu X; Ji Z; Zhang Z
    Bioinformatics; 2017 Feb; 33(3):438-440. PubMed ID: 28172557
    [TBL] [Abstract][Full Text] [Related]  

  • 12. aRNApipe: a balanced, efficient and distributed pipeline for processing RNA-seq data in high-performance computing environments.
    Alonso A; Lasseigne BN; Williams K; Nielsen J; Ramaker RC; Hardigan AA; Johnston B; Roberts BS; Cooper SJ; Marsal S; Myers RM
    Bioinformatics; 2017 Jun; 33(11):1727-1729. PubMed ID: 28108448
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Julia for biologists.
    Roesch E; Greener JG; MacLean AL; Nassar H; Rackauckas C; Holy TE; Stumpf MPH
    Nat Methods; 2023 May; 20(5):655-664. PubMed ID: 37024649
    [TBL] [Abstract][Full Text] [Related]  

  • 14. MomentClosure.jl: automated moment closure approximations in Julia.
    Sukys A; Grima R
    Bioinformatics; 2021 Dec; 38(1):289-290. PubMed ID: 34170295
    [TBL] [Abstract][Full Text] [Related]  

  • 15. miqoGraph: fitting admixture graphs using mixed-integer quadratic optimization.
    Yan J; Patterson N; Narasimhan VM
    Bioinformatics; 2021 Aug; 37(16):2488-2490. PubMed ID: 33247708
    [TBL] [Abstract][Full Text] [Related]  

  • 16. MIToS.jl: mutual information tools for protein sequence analysis in the Julia language.
    Zea DJ; Anfossi D; Nielsen M; Marino-Buslje C
    Bioinformatics; 2017 Feb; 33(4):564-565. PubMed ID: 27797756
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SBMLToolkit.jl: a Julia package for importing SBML into the SciML ecosystem.
    Lang PF; Jain A; Rackauckas C
    J Integr Bioinform; 2024 May; ():. PubMed ID: 38801698
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DelaySSAToolkit.jl: stochastic simulation of reaction systems with time delays in Julia.
    Fu X; Zhou X; Gu D; Cao Z; Grima R
    Bioinformatics; 2022 Sep; 38(17):4243-4245. PubMed ID: 35799359
    [TBL] [Abstract][Full Text] [Related]  

  • 19. NewWave: a scalable R/Bioconductor package for the dimensionality reduction and batch effect removal of single-cell RNA-seq data.
    Agostinis F; Romualdi C; Sales G; Risso D
    Bioinformatics; 2022 Apr; 38(9):2648-2650. PubMed ID: 35266509
    [TBL] [Abstract][Full Text] [Related]  

  • 20. BMX: Biological modelling and interface exchange.
    Palmer BJ; Almgren AS; Johnson CGM; Myers AT; Cannon WR
    Sci Rep; 2023 Jul; 13(1):12235. PubMed ID: 37507417
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.