These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

200 related articles for article (PubMed ID: 34791067)

  • 1. Variant Library Annotation Tool (VaLiAnT): an oligonucleotide library design and annotation tool for saturation genome editing and other deep mutational scanning experiments.
    Barbon L; Offord V; Radford EJ; Butler AP; Gerety SS; Adams DJ; Tan HK; Waters AJ
    Bioinformatics; 2022 Jan; 38(4):892-899. PubMed ID: 34791067
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Transcript annotation tool (TransAT): an R package for retrieving annotations for transcript-specific genetic variants.
    Shih CY; Chattopadhyay A; Wu CH; Tien YW; Lu TP
    BMC Bioinformatics; 2021 Jun; 22(1):350. PubMed ID: 34182919
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CRISPRitz: rapid, high-throughput and variant-aware in silico off-target site identification for CRISPR genome editing.
    Cancellieri S; Canver MC; Bombieri N; Giugno R; Pinello L
    Bioinformatics; 2020 Apr; 36(7):2001-2008. PubMed ID: 31764961
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Crisflash: open-source software to generate CRISPR guide RNAs against genomes annotated with individual variation.
    Jacquin ALS; Odom DT; Lukk M
    Bioinformatics; 2019 Sep; 35(17):3146-3147. PubMed ID: 30649181
    [TBL] [Abstract][Full Text] [Related]  

  • 5. GLANET: genomic loci annotation and enrichment tool.
    Otlu B; Firtina C; Keles S; Tastan O
    Bioinformatics; 2017 Sep; 33(18):2818-2828. PubMed ID: 28541490
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MultiGuideScan: a multi-processing tool for designing CRISPR guide RNA libraries.
    Li T; Wang S; Luo F; Wu FX; Wang J
    Bioinformatics; 2020 Feb; 36(3):920-921. PubMed ID: 31386102
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Assessing concordance among human, in silico predictions and functional assays on genetic variant classification.
    Luo J; Zhou T; You X; Zi Y; Li X; Wu Y; Lan Z; Zhi Q; Yi D; Xu L; Li A; Zhong Z; Zhu M; Sun G; Zhu T; Rao J; Lin L; Sang J; Shi Y
    Bioinformatics; 2019 Dec; 35(24):5163-5170. PubMed ID: 31141141
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Enhanced guide-RNA design and targeting analysis for precise CRISPR genome editing of single and consortia of industrially relevant and non-model organisms.
    Mendoza BJ; Trinh CT
    Bioinformatics; 2018 Jan; 34(1):16-23. PubMed ID: 28968798
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PaSiT: a novel approach based on short-oligonucleotide frequencies for efficient bacterial identification and typing.
    Goussarov G; Cleenwerck I; Mysara M; Leys N; Monsieurs P; Tahon G; Carlier A; Vandamme P; Van Houdt R
    Bioinformatics; 2020 Apr; 36(8):2337-2344. PubMed ID: 31899493
    [TBL] [Abstract][Full Text] [Related]  

  • 10. BleTIES: annotation of natural genome editing in ciliates using long read sequencing.
    Seah BKB; Swart EC
    Bioinformatics; 2021 Nov; 37(21):3929-3931. PubMed ID: 34487139
    [TBL] [Abstract][Full Text] [Related]  

  • 11. DNA Features Viewer: a sequence annotation formatting and plotting library for Python.
    Zulkower V; Rosser S
    Bioinformatics; 2020 Aug; 36(15):4350-4352. PubMed ID: 32637988
    [TBL] [Abstract][Full Text] [Related]  

  • 12. CROTON: an automated and variant-aware deep learning framework for predicting CRISPR/Cas9 editing outcomes.
    Li VR; Zhang Z; Troyanskaya OG
    Bioinformatics; 2021 Jul; 37(Suppl_1):i342-i348. PubMed ID: 34252931
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Explore, edit and leverage genomic annotations using Python GTF toolkit.
    Lopez F; Charbonnier G; Kermezli Y; Belhocine M; Ferré Q; Zweig N; Aribi M; Gonzalez A; Spicuglia S; Puthier D
    Bioinformatics; 2019 Sep; 35(18):3487-3488. PubMed ID: 30768152
    [TBL] [Abstract][Full Text] [Related]  

  • 14. StandEnA: a customizable workflow for standardized annotation and generating a presence-absence matrix of proteins.
    Chafra F; Borim Correa F; Oni F; Konu Karakayalı Ö; Stadler PF; Nunes da Rocha U
    Bioinform Adv; 2023; 3(1):vbad069. PubMed ID: 37448812
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Varanto: variant enrichment analysis and annotation.
    Timonen O; Särkkä M; Fülöp T; Mattsson A; Kekäläinen J; Paananen J
    Bioinformatics; 2019 Sep; 35(17):3154-3156. PubMed ID: 30689722
    [TBL] [Abstract][Full Text] [Related]  

  • 16. GenomeWarp: an alignment-based variant coordinate transformation.
    McLean CY; Hwang Y; Poplin R; DePristo MA
    Bioinformatics; 2019 Nov; 35(21):4389-4391. PubMed ID: 30916319
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Efficient querying of genomic reference databases with gget.
    Luebbert L; Pachter L
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36610989
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Megadepth: efficient coverage quantification for BigWigs and BAMs.
    Wilks C; Ahmed O; Baker DN; Zhang D; Collado-Torres L; Langmead B
    Bioinformatics; 2021 Sep; 37(18):3014-3016. PubMed ID: 33693500
    [TBL] [Abstract][Full Text] [Related]  

  • 19. AGILE: an assembled genome mining pipeline.
    Hughes GM; Teeling EC
    Bioinformatics; 2019 Apr; 35(7):1252-1254. PubMed ID: 30184049
    [TBL] [Abstract][Full Text] [Related]  

  • 20.
    ; ; . PubMed ID:
    [No Abstract]   [Full Text] [Related]  

    [Next]    [New Search]
    of 10.