These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
265 related articles for article (PubMed ID: 34809557)
1. trioPhaser: using Mendelian inheritance logic to improve genomic phasing of trios. Miller DB; Piccolo SR BMC Bioinformatics; 2021 Nov; 22(1):559. PubMed ID: 34809557 [TBL] [Abstract][Full Text] [Related]
2. Benchmarking phasing software with a whole-genome sequenced cattle pedigree. Oget-Ebrad C; Kadri NK; Moreira GCM; Karim L; Coppieters W; Georges M; Druet T BMC Genomics; 2022 Feb; 23(1):130. PubMed ID: 35164677 [TBL] [Abstract][Full Text] [Related]
3. Read-based phasing of related individuals. Garg S; Martin M; Marschall T Bioinformatics; 2016 Jun; 32(12):i234-i242. PubMed ID: 27307622 [TBL] [Abstract][Full Text] [Related]
4. Genotype calling and phasing using next-generation sequencing reads and a haplotype scaffold. Menelaou A; Marchini J Bioinformatics; 2013 Jan; 29(1):84-91. PubMed ID: 23093610 [TBL] [Abstract][Full Text] [Related]
5. A strategy to improve phasing of whole-genome sequenced individuals through integration of familial information from dense genotype panels. Faux P; Druet T Genet Sel Evol; 2017 May; 49(1):46. PubMed ID: 28511677 [TBL] [Abstract][Full Text] [Related]
6. Integrating read-based and population-based phasing for dense and accurate haplotyping of individual genomes. Bansal V Bioinformatics; 2019 Jul; 35(14):i242-i248. PubMed ID: 31510646 [TBL] [Abstract][Full Text] [Related]
7. HaplotypeTools: a toolkit for accurately identifying recombination and recombinant genotypes. Farrer RA BMC Bioinformatics; 2021 Nov; 22(1):560. PubMed ID: 34809571 [TBL] [Abstract][Full Text] [Related]
8. Complete genome phasing of family quartet by combination of genetic, physical and population-based phasing analysis. Lajugie J; Mukhopadhyay R; Schizas M; Lailler N; Fourel N; Bouhassira EE PLoS One; 2013; 8(5):e64571. PubMed ID: 23741343 [TBL] [Abstract][Full Text] [Related]
9. Off the street phasing (OTSP): no hassle haplotype phasing for molecular PGD applications. Zeevi DA; Zahdeh F; Kling Y; Carmi S; Altarescu G J Assist Reprod Genet; 2019 Apr; 36(4):727-739. PubMed ID: 30617673 [TBL] [Abstract][Full Text] [Related]
11. Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C. Kronenberg ZN; Rhie A; Koren S; Concepcion GT; Peluso P; Munson KM; Porubsky D; Kuhn K; Mueller KA; Low WY; Hiendleder S; Fedrigo O; Liachko I; Hall RJ; Phillippy AM; Eichler EE; Williams JL; Smith TPL; Jarvis ED; Sullivan ST; Kingan SB Nat Commun; 2021 Apr; 12(1):1935. PubMed ID: 33911078 [TBL] [Abstract][Full Text] [Related]
12. InPhaDel: integrative shotgun and proximity-ligation sequencing to phase deletions with single nucleotide polymorphisms. Patel A; Edge P; Selvaraj S; Bansal V; Bafna V Nucleic Acids Res; 2016 Jul; 44(12):e111. PubMed ID: 27105843 [TBL] [Abstract][Full Text] [Related]
13. A complete pipeline enables haplotyping and phasing macrohaplotype in long sequencing reads for polyploidy samples and a multi-source DNA mixture. Wang X; Muenzler M; King J; Liu M; Li H; Budowle B; Ge J Electrophoresis; 2024 May; 45(9-10):877-884. PubMed ID: 38196015 [TBL] [Abstract][Full Text] [Related]
14. Genotype calling and haplotyping in parent-offspring trios. Chen W; Li B; Zeng Z; Sanna S; Sidore C; Busonero F; Kang HM; Li Y; Abecasis GR Genome Res; 2013 Jan; 23(1):142-51. PubMed ID: 23064751 [TBL] [Abstract][Full Text] [Related]
15. Read-Based Phasing and Analysis of Phased Variants with WhatsHap. Martin M; Ebert P; Marschall T Methods Mol Biol; 2023; 2590():127-138. PubMed ID: 36335496 [TBL] [Abstract][Full Text] [Related]
16. HaploMaker: An improved algorithm for rapid haplotype assembly of genomic sequences. Fruzangohar M; Timmins WA; Kravchuk O; Taylor J Gigascience; 2022 May; 11():. PubMed ID: 35579550 [TBL] [Abstract][Full Text] [Related]
18. A combined long-range phasing and long haplotype imputation method to impute phase for SNP genotypes. Hickey JM; Kinghorn BP; Tier B; Wilson JF; Dunstan N; van der Werf JH Genet Sel Evol; 2011 Mar; 43(1):12. PubMed ID: 21388557 [TBL] [Abstract][Full Text] [Related]
20. Clair3-trio: high-performance Nanopore long-read variant calling in family trios with trio-to-trio deep neural networks. Su J; Zheng Z; Ahmed SS; Lam TW; Luo R Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35849103 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]