175 related articles for article (PubMed ID: 34824477)
1. MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging.
Schapiro D; Sokolov A; Yapp C; Chen YA; Muhlich JL; Hess J; Creason AL; Nirmal AJ; Baker GJ; Nariya MK; Lin JR; Maliga Z; Jacobson CA; Hodgman MW; Ruokonen J; Farhi SL; Abbondanza D; McKinley ET; Persson D; Betts C; Sivagnanam S; Regev A; Goecks J; Coffey RJ; Coussens LM; Santagata S; Sorger PK
Nat Methods; 2022 Mar; 19(3):311-315. PubMed ID: 34824477
[TBL] [Abstract][Full Text] [Related]
2. A SIMPLI (Single-cell Identification from MultiPLexed Images) approach for spatially-resolved tissue phenotyping at single-cell resolution.
Bortolomeazzi M; Montorsi L; Temelkovski D; Keddar MR; Acha-Sagredo A; Pitcher MJ; Basso G; Laghi L; Rodriguez-Justo M; Spencer J; Ciccarelli FD
Nat Commun; 2022 Feb; 13(1):781. PubMed ID: 35140207
[TBL] [Abstract][Full Text] [Related]
3. Stitching and registering highly multiplexed whole-slide images of tissues and tumors using ASHLAR.
Muhlich JL; Chen YA; Yapp C; Russell D; Santagata S; Sorger PK
Bioinformatics; 2022 Sep; 38(19):4613-4621. PubMed ID: 35972352
[TBL] [Abstract][Full Text] [Related]
4. A real-time GPU-accelerated parallelized image processor for large-scale multiplexed fluorescence microscopy data.
Lu G; Baertsch MA; Hickey JW; Goltsev Y; Rech AJ; Mani L; Forgó E; Kong C; Jiang S; Nolan GP; Rosenthal EL
Front Immunol; 2022; 13():981825. PubMed ID: 36211386
[TBL] [Abstract][Full Text] [Related]
5. A community-based approach to image analysis of cells, tissues and tumors.
; Vizcarra JC; Burlingame EA; Hug CB; Goltsev Y; White BS; Tyson DR; Sokolov A
Comput Med Imaging Graph; 2022 Jan; 95():102013. PubMed ID: 34864359
[TBL] [Abstract][Full Text] [Related]
6. Platform for Quantitative Evaluation of Spatial Intratumoral Heterogeneity in Multiplexed Fluorescence Images.
Spagnolo DM; Al-Kofahi Y; Zhu P; Lezon TR; Gough A; Stern AM; Lee AV; Ginty F; Sarachan B; Taylor DL; Chennubhotla SC
Cancer Res; 2017 Nov; 77(21):e71-e74. PubMed ID: 29092944
[TBL] [Abstract][Full Text] [Related]
7. A framework for multiplex imaging optimization and reproducible analysis.
Eng J; Bucher E; Hu Z; Zheng T; Gibbs SL; Chin K; Gray JW
Commun Biol; 2022 May; 5(1):438. PubMed ID: 35545666
[TBL] [Abstract][Full Text] [Related]
8. A scalable and modular automated pipeline for stitching of large electron microscopy datasets.
Mahalingam G; Torres R; Kapner D; Trautman ET; Fliss T; Seshamani S; Perlman E; Young R; Kinn S; Buchanan J; Takeno MM; Yin W; Bumbarger DJ; Gwinn RP; Nyhus J; Lein E; Smith SJ; Reid RC; Khairy KA; Saalfeld S; Collman F; Macarico da Costa N
Elife; 2022 Jul; 11():. PubMed ID: 35880860
[TBL] [Abstract][Full Text] [Related]
9. MAUI (MBI Analysis User Interface)-An image processing pipeline for Multiplexed Mass Based Imaging.
Baranski A; Milo I; Greenbaum S; Oliveria JP; Mrdjen D; Angelo M; Keren L
PLoS Comput Biol; 2021 Apr; 17(4):e1008887. PubMed ID: 33872301
[TBL] [Abstract][Full Text] [Related]
10. Cytokit: a single-cell analysis toolkit for high dimensional fluorescent microscopy imaging.
Czech E; Aksoy BA; Aksoy P; Hammerbacher J
BMC Bioinformatics; 2019 Sep; 20(1):448. PubMed ID: 31477013
[TBL] [Abstract][Full Text] [Related]
11. Alignment, segmentation and neighborhood analysis in cyclic immunohistochemistry data using CASSATT.
Brockman AA; Khurana R; Bartkowiak T; Thomas PL; Sivagnanam S; Betts CB; Coussens LM; Lovly CM; Irish JM; Ihrie RA
Cytometry B Clin Cytom; 2023 Sep; 104(5):344-355. PubMed ID: 36748312
[TBL] [Abstract][Full Text] [Related]
12. Open-Source Whole Slide Image Preparation and Viewing Pipeline.
Norgan AP; Shah KK; Juskewitch JE; Maleszewski JJ
Arch Pathol Lab Med; 2018 Dec; 142(12):1454-1455. PubMed ID: 30500278
[No Abstract] [Full Text] [Related]
13. mxnorm: An R Package to Normalize Multiplexed Imaging Data.
Harris C; Wrobel J; Vandekar S
J Open Source Softw; 2022; 7(71):. PubMed ID: 36017308
[TBL] [Abstract][Full Text] [Related]
14. Robust phenotyping of highly multiplexed tissue imaging data using pixel-level clustering.
Liu CC; Greenwald NF; Kong A; McCaffrey EF; Leow KX; Mrdjen D; Cannon BJ; Rumberger JL; Varra SR; Angelo M
Nat Commun; 2023 Aug; 14(1):4618. PubMed ID: 37528072
[TBL] [Abstract][Full Text] [Related]
15. Statistical Analysis of Multiplex Immunofluorescence and Immunohistochemistry Imaging Data.
Wrobel J; Harris C; Vandekar S
Methods Mol Biol; 2023; 2629():141-168. PubMed ID: 36929077
[TBL] [Abstract][Full Text] [Related]
16. Deep cell phenotyping and spatial analysis of multiplexed imaging with TRACERx-PHLEX.
Magness A; Colliver E; Enfield KSS; Lee C; Shimato M; Daly E; Moore DA; Sivakumar M; Valand K; Levi D; Hiley CT; Hobson PS; van Maldegem F; Reading JL; Quezada SA; Downward J; Sahai E; Swanton C; Angelova M
Nat Commun; 2024 Jun; 15(1):5135. PubMed ID: 38879602
[TBL] [Abstract][Full Text] [Related]
17. MIRIAM: A machine and deep learning single-cell segmentation and quantification pipeline for multi-dimensional tissue images.
McKinley ET; Shao J; Ellis ST; Heiser CN; Roland JT; Macedonia MC; Vega PN; Shin S; Coffey RJ; Lau KS
Cytometry A; 2022 Jun; 101(6):521-528. PubMed ID: 35084791
[TBL] [Abstract][Full Text] [Related]
18. Technical Note: Design and implementation of a high-throughput pipeline for reconstruction and quantitative analysis of CT image data.
Hoffman J; Emaminejad N; Wahi-Anwar M; Kim GH; Brown M; Young S; McNitt-Gray M
Med Phys; 2019 May; 46(5):2310-2322. PubMed ID: 30677145
[TBL] [Abstract][Full Text] [Related]
19. Pathology Image Exchange: The Dutch Digital Pathology Platform for Exchange of Whole-Slide Images for Efficient Teleconsultation, Telerevision, and Virtual Expert Panels.
van Diest PJ; Huisman A; van Ekris J; Meijer J; Willems S; Hofhuis H; Verbeek X; van der Wel M; Vos S; Leguit R; van den Brand M; Hebeda K; Grünberg K
JCO Clin Cancer Inform; 2019 Jun; 3():1-7. PubMed ID: 31194585
[TBL] [Abstract][Full Text] [Related]
20. An open-source solution for advanced imaging flow cytometry data analysis using machine learning.
Hennig H; Rees P; Blasi T; Kamentsky L; Hung J; Dao D; Carpenter AE; Filby A
Methods; 2017 Jan; 112():201-210. PubMed ID: 27594698
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
