These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

222 related articles for article (PubMed ID: 34828361)

  • 1. Correcting the Estimation of Viral Taxa Distributions in Next-Generation Sequencing Data after Applying Artificial Neural Networks.
    Kohls M; Kircher M; Krepel J; Liebig P; Jung K
    Genes (Basel); 2021 Oct; 12(11):. PubMed ID: 34828361
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Comparison of different assembly and annotation tools on analysis of simulated viral metagenomic communities in the gut.
    Vázquez-Castellanos JF; García-López R; Pérez-Brocal V; Pignatelli M; Moya A
    BMC Genomics; 2014 Jan; 15():37. PubMed ID: 24438450
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Cataloguing the taxonomic origins of sequences from a heterogeneous sample using phylogenomics: applications in adventitious agent detection.
    Charlebois RL; Ng SH; Gisonni-Lex L; Mallet L
    PDA J Pharm Sci Technol; 2014; 68(6):602-18. PubMed ID: 25475635
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Machine Learning for detection of viral sequences in human metagenomic datasets.
    Bzhalava Z; Tampuu A; Bała P; Vicente R; Dillner J
    BMC Bioinformatics; 2018 Sep; 19(1):336. PubMed ID: 30249176
    [TBL] [Abstract][Full Text] [Related]  

  • 5.
    MacDonald ML; Polson SW; Lee KH
    mSphere; 2021 Apr; 6(2):. PubMed ID: 33883263
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Virus detection in high-throughput sequencing data without a reference genome of the host.
    Kruppa J; Jo WK; van der Vries E; Ludlow M; Osterhaus A; Baumgaertner W; Jung K
    Infect Genet Evol; 2018 Dec; 66():180-187. PubMed ID: 30292006
    [TBL] [Abstract][Full Text] [Related]  

  • 7. MiCoP: microbial community profiling method for detecting viral and fungal organisms in metagenomic samples.
    LaPierre N; Mangul S; Alser M; Mandric I; Wu NC; Koslicki D; Eskin E
    BMC Genomics; 2019 Jun; 20(Suppl 5):423. PubMed ID: 31167634
    [TBL] [Abstract][Full Text] [Related]  

  • 8. A statistical framework for accurate taxonomic assignment of metagenomic sequencing reads.
    Jiang H; An L; Lin SM; Feng G; Qiu Y
    PLoS One; 2012; 7(10):e46450. PubMed ID: 23049702
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Machine learning random forest for predicting oncosomatic variant NGS analysis.
    Pellegrino E; Jacques C; Beaufils N; Nanni I; Carlioz A; Metellus P; Ouafik L
    Sci Rep; 2021 Nov; 11(1):21820. PubMed ID: 34750410
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Application and Comparison of Machine Learning and Database-Based Methods in Taxonomic Classification of High-Throughput Sequencing Data.
    Tian Q; Zhang P; Zhai Y; Wang Y; Zou Q
    Genome Biol Evol; 2024 May; 16(5):. PubMed ID: 38748485
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Benchmarking metagenomics classifiers on ancient viral DNA: a simulation study.
    Arizmendi Cárdenas YO; Neuenschwander S; Malaspinas AS
    PeerJ; 2022; 10():e12784. PubMed ID: 35356467
    [TBL] [Abstract][Full Text] [Related]  

  • 12. MetageNN: a memory-efficient neural network taxonomic classifier robust to sequencing errors and missing genomes.
    Peres da Silva R; Suphavilai C; Nagarajan N
    BMC Bioinformatics; 2024 Apr; 25(Suppl 1):153. PubMed ID: 38627615
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A multi-task CNN learning model for taxonomic assignment of human viruses.
    Ma H; Tan TW; Ban KHK
    BMC Bioinformatics; 2021 Jun; 22(Suppl 6):194. PubMed ID: 34078269
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A fast and robust protocol for metataxonomic analysis using RNAseq data.
    Cox JW; Ballweg RA; Taft DH; Velayutham P; Haslam DB; Porollo A
    Microbiome; 2017 Jan; 5(1):7. PubMed ID: 28103917
    [TBL] [Abstract][Full Text] [Related]  

  • 15. ViraMiner: Deep learning on raw DNA sequences for identifying viral genomes in human samples.
    Tampuu A; Bzhalava Z; Dillner J; Vicente R
    PLoS One; 2019; 14(9):e0222271. PubMed ID: 31509583
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Reference-Free Plant Disease Detection Using Machine Learning and Long-Read Metagenomic Sequencing.
    Johnson MA; Vinatzer BA; Li S
    Appl Environ Microbiol; 2023 Jun; 89(6):e0026023. PubMed ID: 37184398
    [TBL] [Abstract][Full Text] [Related]  

  • 17. NGS read classification using AI.
    Voigt B; Fischer O; Krumnow C; Herta C; Dabrowski PW
    PLoS One; 2021; 16(12):e0261548. PubMed ID: 34936673
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Strain-level metagenomic assignment and compositional estimation for long reads with MetaMaps.
    Dilthey AT; Jain C; Koren S; Phillippy AM
    Nat Commun; 2019 Jul; 10(1):3066. PubMed ID: 31296857
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assembly and Annotation of Viral Metagenomes from Short-Read Sequencing Data.
    Mangalea MR; Keift K; Duerkop BA; Anantharaman K
    Methods Mol Biol; 2023; 2649():317-337. PubMed ID: 37258871
    [TBL] [Abstract][Full Text] [Related]  

  • 20. NmTHC: a hybrid error correction method based on a generative neural machine translation model with transfer learning.
    Wang R; Chen J
    BMC Genomics; 2024 Jun; 25(1):573. PubMed ID: 38849740
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.