These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

147 related articles for article (PubMed ID: 34837950)

  • 1. Baiting out a full length sequence from unmapped RNA-seq data.
    Li D; Huang Q; Huang L; Wen J; Luo J; Li Q; Peng Y; Zhang Y
    BMC Genomics; 2021 Nov; 22(1):857. PubMed ID: 34837950
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Another lesson from unmapped reads: in-depth analysis of RNA-Seq reads from various horse tissues.
    Gurgul A; Szmatoła T; Ocłoń E; Jasielczuk I; Semik-Gurgul E; Finno CJ; Petersen JL; Bellone R; Hales EN; Ząbek T; Arent Z; Kotula-Balak M; Bugno-Poniewierska M
    J Appl Genet; 2022 Sep; 63(3):571-581. PubMed ID: 35670911
    [TBL] [Abstract][Full Text] [Related]  

  • 3. CAFU: a Galaxy framework for exploring unmapped RNA-Seq data.
    Chen S; Ren C; Zhai J; Yu J; Zhao X; Li Z; Zhang T; Ma W; Han Z; Ma C
    Brief Bioinform; 2020 Mar; 21(2):676-686. PubMed ID: 30815667
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The case for using mapped exonic non-duplicate reads when reporting RNA-sequencing depth: examples from pediatric cancer datasets.
    Beale HC; Roger JM; Cattle MA; McKay LT; Thompson DKA; Learned K; Lyle AG; Kephart ET; Currie R; Lam DL; Sanders L; Pfeil J; Vivian J; Bjork I; Salama SR; Haussler D; Vaske OM
    Gigascience; 2021 Mar; 10(3):. PubMed ID: 33712853
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Exploring the unmapped DNA and RNA reads in a songbird genome.
    Laine VN; Gossmann TI; van Oers K; Visser ME; Groenen MAM
    BMC Genomics; 2019 Jan; 20(1):19. PubMed ID: 30621573
    [TBL] [Abstract][Full Text] [Related]  

  • 6. High-Throughput Cellular RNA Sequencing (HiCAR-Seq): Cost-Effective, High-Throughput 3' mRNA-Seq Method Enabling Individual Sample Quality Control.
    Veeranagouda Y; Zachayus JL; Guillemot JC; Venier O; Didier M
    Curr Protoc Mol Biol; 2020 Sep; 132(1):e123. PubMed ID: 32735043
    [TBL] [Abstract][Full Text] [Related]  

  • 7. PacBio full-length cDNA sequencing integrated with RNA-seq reads drastically improves the discovery of splicing transcripts in rice.
    Zhang G; Sun M; Wang J; Lei M; Li C; Zhao D; Huang J; Li W; Li S; Li J; Yang J; Luo Y; Hu S; Zhang B
    Plant J; 2019 Jan; 97(2):296-305. PubMed ID: 30288819
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Target-capture full-length double-strand cDNA sequencing for alternative splicing analysis.
    Ura H; Togi S; Niida Y
    RNA Biol; 2021 Nov; 18(11):1600-1607. PubMed ID: 33472537
    [TBL] [Abstract][Full Text] [Related]  

  • 9. From trash to treasure: detecting unexpected contamination in unmapped NGS data.
    Sangiovanni M; Granata I; Thind AS; Guarracino MR
    BMC Bioinformatics; 2019 Apr; 20(Suppl 4):168. PubMed ID: 30999839
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Transformation of alignment files improves performance of variant callers for long-read RNA sequencing data.
    de Souza VBC; Jordan BT; Tseng E; Nelson EA; Hirschi KK; Sheynkman G; Robinson MD
    Genome Biol; 2023 Apr; 24(1):91. PubMed ID: 37095564
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Unmapped reads from cattle RNAseq data: A source for missing and misassembled sequences in the reference assemblies and for detection of pathogens in the host.
    Usman T; Hadlich F; Demasius W; Weikard R; Kühn C
    Genomics; 2017 Jan; 109(1):36-42. PubMed ID: 27913251
    [TBL] [Abstract][Full Text] [Related]  

  • 12. HSA: a heuristic splice alignment tool.
    Bu J; Chi X; Jin Z
    BMC Syst Biol; 2013; 7 Suppl 2(Suppl 2):S10. PubMed ID: 24564867
    [TBL] [Abstract][Full Text] [Related]  

  • 13. MustSeq, an alternative approach for multiplexible strand-specific 3' end sequencing of mRNA transcriptome confers high efficiency and practicality.
    Mai L; Qiu Y; Lian Z; Chen C; Wang L; Yin Y; Wang S; Yang X; Li Y; Peng W; Luo C; Pan X
    RNA Biol; 2021 Oct; 18(sup1):232-243. PubMed ID: 34586036
    [TBL] [Abstract][Full Text] [Related]  

  • 14. RNA sequencing and quantitation using the Helicos Genetic Analysis System.
    Raz T; Causey M; Jones DR; Kieu A; Letovsky S; Lipson D; Thayer E; Thompson JF; Milos PM
    Methods Mol Biol; 2011; 733():37-49. PubMed ID: 21431761
    [TBL] [Abstract][Full Text] [Related]  

  • 15. cloudrnaSPAdes: isoform assembly using bulk barcoded RNA sequencing data.
    Meleshko D; Prjbelski AD; Raiko M; Tomescu AI; Tilgner H; Hajirasouliha I
    Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38262343
    [TBL] [Abstract][Full Text] [Related]  

  • 16. EXPRSS: an Illumina based high-throughput expression-profiling method to reveal transcriptional dynamics.
    Rallapalli G; Kemen EM; Robert-Seilaniantz A; Segonzac C; Etherington GJ; Sohn KH; MacLean D; Jones JD
    BMC Genomics; 2014 May; 15(1):341. PubMed ID: 24884414
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Evaluation of methods to detect circular RNAs from single-end RNA-sequencing data.
    Nguyen MH; Nguyen HN; Vu TN
    BMC Genomics; 2022 Feb; 23(1):106. PubMed ID: 35135477
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Full-length isoform concatenation sequencing to resolve cancer transcriptome complexity.
    Wijeratne S; Gonzalez MEH; Roach K; Miller KE; Schieffer KM; Fitch JR; Leonard J; White P; Kelly BJ; Cottrell CE; Mardis ER; Wilson RK; Miller AR
    BMC Genomics; 2024 Jan; 25(1):122. PubMed ID: 38287261
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Short Sequence Aligner Benchmarking for Chromatin Research.
    Carter JL; Stevens H; Ridge PG; Johnson SM
    Int J Mol Sci; 2023 Sep; 24(18):. PubMed ID: 37762379
    [TBL] [Abstract][Full Text] [Related]  

  • 20. TIGAR2: sensitive and accurate estimation of transcript isoform expression with longer RNA-Seq reads.
    Nariai N; Kojima K; Mimori T; Sato Y; Kawai Y; Yamaguchi-Kabata Y; Nagasaki M
    BMC Genomics; 2014; 15 Suppl 10(Suppl 10):S5. PubMed ID: 25560536
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.