331 related articles for article (PubMed ID: 34844857)
1. The dark proteome: translation from noncanonical open reading frames.
Wright BW; Yi Z; Weissman JS; Chen J
Trends Cell Biol; 2022 Mar; 32(3):243-258. PubMed ID: 34844857
[TBL] [Abstract][Full Text] [Related]
2. Reconsidering proteomic diversity with functional investigation of small ORFs and alternative ORFs.
Brunet MA; Leblanc S; Roucou X
Exp Cell Res; 2020 Aug; 393(1):112057. PubMed ID: 32387289
[TBL] [Abstract][Full Text] [Related]
3. Widespread stable noncanonical peptides identified by integrated analyses of ribosome profiling and ORF features.
Yang H; Li Q; Stroup EK; Wang S; Ji Z
Nat Commun; 2024 Mar; 15(1):1932. PubMed ID: 38431639
[TBL] [Abstract][Full Text] [Related]
4. De novo birth of functional microproteins in the human lineage.
Vakirlis N; Vance Z; Duggan KM; McLysaght A
Cell Rep; 2022 Dec; 41(12):111808. PubMed ID: 36543139
[TBL] [Abstract][Full Text] [Related]
5. What Can Ribo-Seq, Immunopeptidomics, and Proteomics Tell Us About the Noncanonical Proteome?
Prensner JR; Abelin JG; Kok LW; Clauser KR; Mudge JM; Ruiz-Orera J; Bassani-Sternberg M; Moritz RL; Deutsch EW; van Heesch S
Mol Cell Proteomics; 2023 Sep; 22(9):100631. PubMed ID: 37572790
[TBL] [Abstract][Full Text] [Related]
6. Discovery of Unannotated Small Open Reading Frames in Streptococcus pneumoniae D39 Involved in Quorum Sensing and Virulence Using Ribosome Profiling.
Laczkovich I; Mangano K; Shao X; Hockenberry AJ; Gao Y; Mankin A; Vázquez-Laslop N; Federle MJ
mBio; 2022 Aug; 13(4):e0124722. PubMed ID: 35852327
[TBL] [Abstract][Full Text] [Related]
7. Biological factors and statistical limitations prevent detection of most noncanonical proteins by mass spectrometry.
Wacholder A; Carvunis AR
PLoS Biol; 2023 Dec; 21(12):e3002409. PubMed ID: 38048358
[TBL] [Abstract][Full Text] [Related]
8. Comparative Proteomic Profiling of Unannotated Microproteins and Alternative Proteins in Human Cell Lines.
Cao X; Khitun A; Na Z; Dumitrescu DG; Kubica M; Olatunji E; Slavoff SA
J Proteome Res; 2020 Aug; 19(8):3418-3426. PubMed ID: 32449352
[TBL] [Abstract][Full Text] [Related]
9. Noncanonical open reading frames encode functional proteins essential for cancer cell survival.
Prensner JR; Enache OM; Luria V; Krug K; Clauser KR; Dempster JM; Karger A; Wang L; Stumbraite K; Wang VM; Botta G; Lyons NJ; Goodale A; Kalani Z; Fritchman B; Brown A; Alan D; Green T; Yang X; Jaffe JD; Roth JA; Piccioni F; Kirschner MW; Ji Z; Root DE; Golub TR
Nat Biotechnol; 2021 Jun; 39(6):697-704. PubMed ID: 33510483
[TBL] [Abstract][Full Text] [Related]
10. Pervasive functional translation of noncanonical human open reading frames.
Chen J; Brunner AD; Cogan JZ; Nuñez JK; Fields AP; Adamson B; Itzhak DN; Li JY; Mann M; Leonetti MD; Weissman JS
Science; 2020 Mar; 367(6482):1140-1146. PubMed ID: 32139545
[TBL] [Abstract][Full Text] [Related]
11. Common and phylogenetically widespread coding for peptides by bacterial small RNAs.
Friedman RC; Kalkhof S; Doppelt-Azeroual O; Mueller SA; Chovancová M; von Bergen M; Schwikowski B
BMC Genomics; 2017 Jul; 18(1):553. PubMed ID: 28732463
[TBL] [Abstract][Full Text] [Related]
12. Translation of non-canonical open reading frames as a cancer cell survival mechanism in childhood medulloblastoma.
Hofman DA; Ruiz-Orera J; Yannuzzi I; Murugesan R; Brown A; Clauser KR; Condurat AL; van Dinter JT; Engels SAG; Goodale A; van der Lugt J; Abid T; Wang L; Zhou KN; Vogelzang J; Ligon KL; Phoenix TN; Roth JA; Root DE; Hubner N; Golub TR; Bandopadhayay P; van Heesch S; Prensner JR
Mol Cell; 2024 Jan; 84(2):261-276.e18. PubMed ID: 38176414
[TBL] [Abstract][Full Text] [Related]
13. OpenProt: a more comprehensive guide to explore eukaryotic coding potential and proteomes.
Brunet MA; Brunelle M; Lucier JF; Delcourt V; Levesque M; Grenier F; Samandi S; Leblanc S; Aguilar JD; Dufour P; Jacques JF; Fournier I; Ouangraoua A; Scott MS; Boisvert FM; Roucou X
Nucleic Acids Res; 2019 Jan; 47(D1):D403-D410. PubMed ID: 30299502
[TBL] [Abstract][Full Text] [Related]
14. Open reading frames associated with cancer in the dark matter of the human genome.
Delgado AP; Brandao P; Chapado MJ; Hamid S; Narayanan R
Cancer Genomics Proteomics; 2014; 11(4):201-13. PubMed ID: 25048349
[TBL] [Abstract][Full Text] [Related]
15. Short open reading frames (sORFs) and microproteins: an update on their identification and validation measures.
Leong AZ; Lee PY; Mohtar MA; Syafruddin SE; Pung YF; Low TY
J Biomed Sci; 2022 Mar; 29(1):19. PubMed ID: 35300685
[TBL] [Abstract][Full Text] [Related]
16. Small open reading frames and cellular stress responses.
Khitun A; Ness TJ; Slavoff SA
Mol Omics; 2019 Apr; 15(2):108-116. PubMed ID: 30810554
[TBL] [Abstract][Full Text] [Related]
17. Ribosomal profiling adds new coding sequences to the proteome.
Mumtaz MA; Couso JP
Biochem Soc Trans; 2015 Dec; 43(6):1271-6. PubMed ID: 26614672
[TBL] [Abstract][Full Text] [Related]
18. Biological Factors and Statistical Limitations Prevent Detection of Most Noncanonical Proteins by Mass Spectrometry.
Wacholder A; Carvunis AR
bioRxiv; 2023 Oct; ():. PubMed ID: 36945638
[TBL] [Abstract][Full Text] [Related]
19. Novel insights into noncanonical open reading frames in cancer.
Liu Y; Zeng S; Wu M
Biochim Biophys Acta Rev Cancer; 2022 Jul; 1877(4):188755. PubMed ID: 35777601
[TBL] [Abstract][Full Text] [Related]
20. Translation of Small Open Reading Frames: Roles in Regulation and Evolutionary Innovation.
Ruiz-Orera J; Albà MM
Trends Genet; 2019 Mar; 35(3):186-198. PubMed ID: 30606460
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
