BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

177 related articles for article (PubMed ID: 34845388)

  • 1. OME-NGFF: a next-generation file format for expanding bioimaging data-access strategies.
    Moore J; Allan C; Besson S; Burel JM; Diel E; Gault D; Kozlowski K; Lindner D; Linkert M; Manz T; Moore W; Pape C; Tischer C; Swedlow JR
    Nat Methods; 2021 Dec; 18(12):1496-1498. PubMed ID: 34845388
    [TBL] [Abstract][Full Text] [Related]  

  • 2. OME-Zarr: a cloud-optimized bioimaging file format with international community support.
    Moore J; Basurto-Lozada D; Besson S; Bogovic J; Bragantini J; Brown EM; Burel JM; Casas Moreno X; de Medeiros G; Diel EE; Gault D; Ghosh SS; Gold I; Halchenko YO; Hartley M; Horsfall D; Keller MS; Kittisopikul M; Kovacs G; Küpcü Yoldaş A; Kyoda K; le Tournoulx de la Villegeorges A; Li T; Liberali P; Lindner D; Linkert M; Lüthi J; Maitin-Shepard J; Manz T; Marconato L; McCormick M; Lange M; Mohamed K; Moore W; Norlin N; Ouyang W; Özdemir B; Palla G; Pape C; Pelkmans L; Pietzsch T; Preibisch S; Prete M; Rzepka N; Samee S; Schaub N; Sidky H; Solak AC; Stirling DR; Striebel J; Tischer C; Toloudis D; Virshup I; Walczysko P; Watson AM; Weisbart E; Wong F; Yamauchi KA; Bayraktar O; Cimini BA; Gehlenborg N; Haniffa M; Hotaling N; Onami S; Royer LA; Saalfeld S; Stegle O; Theis FJ; Swedlow JR
    Histochem Cell Biol; 2023 Sep; 160(3):223-251. PubMed ID: 37428210
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Toward scalable reuse of vEM data: OME-Zarr to the rescue.
    Rzepka N; Bogovic JA; Moore JA
    Methods Cell Biol; 2023; 177():359-387. PubMed ID: 37451774
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Metadata matters: access to image data in the real world.
    Linkert M; Rueden CT; Allan C; Burel JM; Moore W; Patterson A; Loranger B; Moore J; Neves C; Macdonald D; Tarkowska A; Sticco C; Hill E; Rossner M; Eliceiri KW; Swedlow JR
    J Cell Biol; 2010 May; 189(5):777-82. PubMed ID: 20513764
    [TBL] [Abstract][Full Text] [Related]  

  • 5. OME-Zarr: a cloud-optimized bioimaging file format with international community support.
    Moore J; Basurto-Lozada D; Besson S; Bogovic J; Bragantini J; Brown EM; Burel JM; Moreno XC; de Medeiros G; Diel EE; Gault D; Ghosh SS; Gold I; Halchenko YO; Hartley M; Horsfall D; Keller MS; Kittisopikul M; Kovacs G; Yoldaş AK; Kyoda K; de la Villegeorges ALT; Li T; Liberali P; Lindner D; Linkert M; Lüthi J; Maitin-Shepard J; Manz T; Marconato L; McCormick M; Lange M; Mohamed K; Moore W; Norlin N; Ouyang W; Özdemir B; Palla G; Pape C; Pelkmans L; Pietzsch T; Preibisch S; Prete M; Rzepka N; Samee S; Schaub N; Sidky H; Solak AC; Stirling DR; Striebel J; Tischer C; Toloudis D; Virshup I; Walczysko P; Watson AM; Weisbart E; Wong F; Yamauchi KA; Bayraktar O; Cimini BA; Gehlenborg N; Haniffa M; Hotaling N; Onami S; Royer LA; Saalfeld S; Stegle O; Theis FJ; Swedlow JR
    bioRxiv; 2023 May; ():. PubMed ID: 36865282
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A global view of standards for open image data formats and repositories.
    Swedlow JR; Kankaanpää P; Sarkans U; Goscinski W; Galloway G; Malacrida L; Sullivan RP; Härtel S; Brown CM; Wood C; Keppler A; Paina F; Loos B; Zullino S; Longo DL; Aime S; Onami S
    Nat Methods; 2021 Dec; 18(12):1440-1446. PubMed ID: 33948027
    [No Abstract]   [Full Text] [Related]  

  • 7. BD5: An open HDF5-based data format to represent quantitative biological dynamics data.
    Kyoda K; Ho KHL; Tohsato Y; Itoga H; Onami S
    PLoS One; 2020; 15(8):e0237468. PubMed ID: 32785254
    [TBL] [Abstract][Full Text] [Related]  

  • 8. mzMLb: A Future-Proof Raw Mass Spectrometry Data Format Based on Standards-Compliant mzML and Optimized for Speed and Storage Requirements.
    Bhamber RS; Jankevics A; Deutsch EW; Jones AR; Dowsey AW
    J Proteome Res; 2021 Jan; 20(1):172-183. PubMed ID: 32864978
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Photon-HDF5: An Open File Format for Timestamp-Based Single-Molecule Fluorescence Experiments.
    Ingargiola A; Laurence T; Boutelle R; Weiss S; Michalet X
    Biophys J; 2016 Jan; 110(1):26-33. PubMed ID: 26745406
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Community standards for open cell migration data.
    Gonzalez-Beltran AN; Masuzzo P; Ampe C; Bakker GJ; Besson S; Eibl RH; Friedl P; Gunzer M; Kittisopikul M; Dévédec SEL; Leo S; Moore J; Paran Y; Prilusky J; Rocca-Serra P; Roudot P; Schuster M; Sergeant G; Strömblad S; Swedlow JR; van Erp M; Van Troys M; Zaritsky A; Sansone SA; Martens L
    Gigascience; 2020 May; 9(5):. PubMed ID: 32396199
    [TBL] [Abstract][Full Text] [Related]  

  • 11. OpenMSI: a high-performance web-based platform for mass spectrometry imaging.
    Rübel O; Greiner A; Cholia S; Louie K; Bethel EW; Northen TR; Bowen BP
    Anal Chem; 2013 Nov; 85(21):10354-61. PubMed ID: 24087878
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Open bioinformatics.
    Jamison DC
    Bioinformatics; 2003 Apr; 19(6):679-80. PubMed ID: 12691978
    [No Abstract]   [Full Text] [Related]  

  • 13. A Comprehensive, FAIR File Format for Neuroanatomical Structure Modeling.
    Sullivan AE; Tappan SJ; Angstman PJ; Rodriguez A; Thomas GC; Hoppes DM; Abdul-Karim MA; Heal ML; Glaser JR
    Neuroinformatics; 2022 Jan; 20(1):221-240. PubMed ID: 34601704
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Photon-HDF5: Open Data Format and Computational Tools for Timestamp-based Single-Molecule Experiments.
    Ingargiola A; Laurence T; Boutelle R; Weiss S; Michalet X
    Proc SPIE Int Soc Opt Eng; 2016 Feb; 9714():. PubMed ID: 28649160
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Metadata management for high content screening in OMERO.
    Li S; Besson S; Blackburn C; Carroll M; Ferguson RK; Flynn H; Gillen K; Leigh R; Lindner D; Linkert M; Moore WJ; Ramalingam B; Rozbicki E; Rustici G; Tarkowska A; Walczysko P; Williams E; Allan C; Burel JM; Moore J; Swedlow JR
    Methods; 2016 Mar; 96():27-32. PubMed ID: 26476368
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Common file formats.
    Leonard SA; Littlejohn TG; Baxevanis AD
    Curr Protoc Bioinformatics; 2007 Jan; Appendix 1():Appendix 1B. PubMed ID: 18428774
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Micro-Meta App: an interactive tool for collecting microscopy metadata based on community specifications.
    Rigano A; Ehmsen S; Öztürk SU; Ryan J; Balashov A; Hammer M; Kirli K; Boehm U; Brown CM; Bellve K; Chambers JJ; Cosolo A; Coleman RA; Faklaris O; Fogarty KE; Guilbert T; Hamacher AB; Itano MS; Keeley DP; Kunis S; Lacoste J; Laude A; Ma WY; Marcello M; Montero-Llopis P; Nelson G; Nitschke R; Pimentel JA; Weidtkamp-Peters S; Park PJ; Alver BH; Grunwald D; Strambio-De-Castillia C
    Nat Methods; 2021 Dec; 18(12):1489-1495. PubMed ID: 34862503
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Towards community-driven metadata standards for light microscopy: tiered specifications extending the OME model.
    Hammer M; Huisman M; Rigano A; Boehm U; Chambers JJ; Gaudreault N; North AJ; Pimentel JA; Sudar D; Bajcsy P; Brown CM; Corbett AD; Faklaris O; Lacoste J; Laude A; Nelson G; Nitschke R; Farzam F; Smith CS; Grunwald D; Strambio-De-Castillia C
    Nat Methods; 2021 Dec; 18(12):1427-1440. PubMed ID: 34862501
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Tripal EUtils: a Tripal module to increase exchange and reuse of genome assembly metadata.
    Conford B; Almsaeed A; Buehler S; Childers CP; Ficklin SP; Staton ME; Poelchau MF
    Database (Oxford); 2020 Jan; 2019():. PubMed ID: 31960040
    [TBL] [Abstract][Full Text] [Related]  

  • 20. MGFp: an open Mascot Generic Format parser library implementation.
    Kirchner M; Steen JA; Hamprecht FA; Steen H
    J Proteome Res; 2010 May; 9(5):2762-3. PubMed ID: 20334363
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.