206 related articles for article (PubMed ID: 34850122)
1. Master lineage transcription factors anchor trans mega transcriptional complexes at highly accessible enhancer sites to promote long-range chromatin clustering and transcription of distal target genes.
White SM; Snyder MP; Yi C
Nucleic Acids Res; 2021 Dec; 49(21):12196-12210. PubMed ID: 34850122
[TBL] [Abstract][Full Text] [Related]
2. Co-occupancy by multiple cardiac transcription factors identifies transcriptional enhancers active in heart.
He A; Kong SW; Ma Q; Pu WT
Proc Natl Acad Sci U S A; 2011 Apr; 108(14):5632-7. PubMed ID: 21415370
[TBL] [Abstract][Full Text] [Related]
3. Enhancer identification in mouse embryonic stem cells using integrative modeling of chromatin and genomic features.
Chen CY; Morris Q; Mitchell JA
BMC Genomics; 2012 Apr; 13():152. PubMed ID: 22537144
[TBL] [Abstract][Full Text] [Related]
4. Alternatively Constructed Estrogen Receptor Alpha-Driven Super-Enhancers Result in Similar Gene Expression in Breast and Endometrial Cell Lines.
Bojcsuk D; Nagy G; Bálint BL
Int J Mol Sci; 2020 Feb; 21(5):. PubMed ID: 32120995
[TBL] [Abstract][Full Text] [Related]
5. Integrated high-throughput analysis identifies super enhancers associated with chemoresistance in SCLC.
Bao J; Li M; Liang S; Yang Y; Wu J; Zou Q; Fang S; Chen S; Guo L
BMC Med Genomics; 2019 May; 12(1):67. PubMed ID: 31118037
[TBL] [Abstract][Full Text] [Related]
6. The functional consequences of variation in transcription factor binding.
Cusanovich DA; Pavlovic B; Pritchard JK; Gilad Y
PLoS Genet; 2014 Mar; 10(3):e1004226. PubMed ID: 24603674
[TBL] [Abstract][Full Text] [Related]
7. Histone H3K4me1 strongly activates the DNase I hypersensitive sites in super-enhancers than those in typical enhancers.
Kang Y; Kang J; Kim A
Biosci Rep; 2021 Jul; 41(7):. PubMed ID: 34195788
[TBL] [Abstract][Full Text] [Related]
8. Computational Approaches for Mining GRO-Seq Data to Identify and Characterize Active Enhancers.
Nagari A; Murakami S; Malladi VS; Kraus WL
Methods Mol Biol; 2017; 1468():121-38. PubMed ID: 27662874
[TBL] [Abstract][Full Text] [Related]
9. Epstein-Barr virus nuclear antigen leader protein localizes to promoters and enhancers with cell transcription factors and EBNA2.
Portal D; Zhou H; Zhao B; Kharchenko PV; Lowry E; Wong L; Quackenbush J; Holloway D; Jiang S; Lu Y; Kieff E
Proc Natl Acad Sci U S A; 2013 Nov; 110(46):18537-42. PubMed ID: 24167291
[TBL] [Abstract][Full Text] [Related]
10. The SWI/SNF chromatin remodelling complex is required for maintenance of lineage specific enhancers.
Alver BH; Kim KH; Lu P; Wang X; Manchester HE; Wang W; Haswell JR; Park PJ; Roberts CW
Nat Commun; 2017 Mar; 8():14648. PubMed ID: 28262751
[TBL] [Abstract][Full Text] [Related]
11. Cooperativity of co-factor NR2F2 with Pioneer Factors GATA3, FOXA1 in promoting ERα function.
Jiang G; Wang X; Sheng D; Zhou L; Liu Y; Xu C; Liu S; Zhang J
Theranostics; 2019; 9(22):6501-6516. PubMed ID: 31588232
[TBL] [Abstract][Full Text] [Related]
12. Integration of Hi-C and ChIP-seq data reveals distinct types of chromatin linkages.
Lan X; Witt H; Katsumura K; Ye Z; Wang Q; Bresnick EH; Farnham PJ; Jin VX
Nucleic Acids Res; 2012 Sep; 40(16):7690-704. PubMed ID: 22675074
[TBL] [Abstract][Full Text] [Related]
13. Integrative epigenomic and high-throughput functional enhancer profiling reveals determinants of enhancer heterogeneity in gastric cancer.
Sheng T; Ho SWT; Ooi WF; Xu C; Xing M; Padmanabhan N; Huang KK; Ma L; Ray M; Guo YA; Sim NL; Anene-Nzelu CG; Chang MM; Razavi-Mohseni M; Beer MA; Foo RSY; Sundar R; Chan YH; Tan ALK; Ong X; Skanderup AJ; White KP; Jha S; Tan P
Genome Med; 2021 Oct; 13(1):158. PubMed ID: 34635154
[TBL] [Abstract][Full Text] [Related]
14. Enhancer occlusion transcripts regulate the activity of human enhancer domains via transcriptional interference: a computational perspective.
Pande A; Makalowski W; Brosius J; Raabe CA
Nucleic Acids Res; 2020 Apr; 48(7):3435-3454. PubMed ID: 32133533
[TBL] [Abstract][Full Text] [Related]
15. Revealing transcription factor and histone modification co-localization and dynamics across cell lines by integrating ChIP-seq and RNA-seq data.
Zhang L; Xue G; Liu J; Li Q; Wang Y
BMC Genomics; 2018 Dec; 19(Suppl 10):914. PubMed ID: 30598100
[TBL] [Abstract][Full Text] [Related]
16. Hierarchical cooperation of transcription factors from integration analysis of DNA sequences, ChIP-Seq and ChIA-PET data.
Wang R; Wang Y; Zhang X; Zhang Y; Du X; Fang Y; Li G
BMC Genomics; 2019 May; 20(Suppl 3):296. PubMed ID: 32039697
[TBL] [Abstract][Full Text] [Related]
17. Enhancer networks revealed by correlated DNAse hypersensitivity states of enhancers.
Malin J; Aniba MR; Hannenhalli S
Nucleic Acids Res; 2013 Aug; 41(14):6828-38. PubMed ID: 23700312
[TBL] [Abstract][Full Text] [Related]
18. SEdb 2.0: a comprehensive super-enhancer database of human and mouse.
Wang Y; Song C; Zhao J; Zhang Y; Zhao X; Feng C; Zhang G; Zhu J; Wang F; Qian F; Zhou L; Zhang J; Bai X; Ai B; Liu X; Wang Q; Li C
Nucleic Acids Res; 2023 Jan; 51(D1):D280-D290. PubMed ID: 36318264
[TBL] [Abstract][Full Text] [Related]
19. Master transcription factors and mediator establish super-enhancers at key cell identity genes.
Whyte WA; Orlando DA; Hnisz D; Abraham BJ; Lin CY; Kagey MH; Rahl PB; Lee TI; Young RA
Cell; 2013 Apr; 153(2):307-19. PubMed ID: 23582322
[TBL] [Abstract][Full Text] [Related]
20. Master transcription factors form interconnected circuitry and orchestrate transcriptional networks in oesophageal adenocarcinoma.
Chen L; Huang M; Plummer J; Pan J; Jiang YY; Yang Q; Silva TC; Gull N; Chen S; Ding LW; An O; Yang H; Cheng Y; Said JW; Doan N; Dinjens WN; Waters KM; Tuli R; Gayther SA; Klempner SJ; Berman BP; Meltzer SJ; Lin DC; Koeffler HP
Gut; 2020 Apr; 69(4):630-640. PubMed ID: 31409603
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
