These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
144 related articles for article (PubMed ID: 34850130)
1. TissueNexus: a database of human tissue functional gene networks built with a large compendium of curated RNA-seq data. Lin CX; Li HD; Deng C; Guan Y; Wang J Nucleic Acids Res; 2022 Jan; 50(D1):D710-D718. PubMed ID: 34850130 [TBL] [Abstract][Full Text] [Related]
2. Xenbase: deep integration of GEO & SRA RNA-seq and ChIP-seq data in a model organism database. Fortriede JD; Pells TJ; Chu S; Chaturvedi P; Wang D; Fisher ME; James-Zorn C; Wang Y; Nenni MJ; Burns KA; Lotay VS; Ponferrada VG; Karimi K; Zorn AM; Vize PD Nucleic Acids Res; 2020 Jan; 48(D1):D776-D782. PubMed ID: 31733057 [TBL] [Abstract][Full Text] [Related]
3. TranscriptomeBrowser 3.0: introducing a new compendium of molecular interactions and a new visualization tool for the study of gene regulatory networks. Lepoivre C; Bergon A; Lopez F; Perumal NB; Nguyen C; Imbert J; Puthier D BMC Bioinformatics; 2012 Jan; 13():19. PubMed ID: 22292669 [TBL] [Abstract][Full Text] [Related]
4. Browsing metabolic and regulatory networks with BioCyc. Latendresse M; Paley S; Karp PD Methods Mol Biol; 2012; 804():197-216. PubMed ID: 22144155 [TBL] [Abstract][Full Text] [Related]
5. CLIPdb: a CLIP-seq database for protein-RNA interactions. Yang YC; Di C; Hu B; Zhou M; Liu Y; Song N; Li Y; Umetsu J; Lu ZJ BMC Genomics; 2015 Feb; 16(1):51. PubMed ID: 25652745 [TBL] [Abstract][Full Text] [Related]
6. Large-scale imputation of epigenomic datasets for systematic annotation of diverse human tissues. Ernst J; Kellis M Nat Biotechnol; 2015 Apr; 33(4):364-76. PubMed ID: 25690853 [TBL] [Abstract][Full Text] [Related]
7. GPSAdb: a comprehensive web resource for interactive exploration of genetic perturbation RNA-seq datasets. Guo S; Xu Z; Dong X; Hu D; Jiang Y; Wang Q; Zhang J; Zhou Q; Liu S; Song W Nucleic Acids Res; 2023 Jan; 51(D1):D964-D968. PubMed ID: 36416261 [TBL] [Abstract][Full Text] [Related]
8. GRAND: a database of gene regulatory network models across human conditions. Ben Guebila M; Lopes-Ramos CM; Weighill D; Sonawane AR; Burkholz R; Shamsaei B; Platig J; Glass K; Kuijjer ML; Quackenbush J Nucleic Acids Res; 2022 Jan; 50(D1):D610-D621. PubMed ID: 34508353 [TBL] [Abstract][Full Text] [Related]
9. A multimodal deep learning model to infer cell-type-specific functional gene networks. Afshar S; Braun PR; Han S; Lin Y BMC Bioinformatics; 2023 Feb; 24(1):47. PubMed ID: 36788477 [TBL] [Abstract][Full Text] [Related]
10. DISCO: a database of Deeply Integrated human Single-Cell Omics data. Li M; Zhang X; Ang KS; Ling J; Sethi R; Lee NYS; Ginhoux F; Chen J Nucleic Acids Res; 2022 Jan; 50(D1):D596-D602. PubMed ID: 34791375 [TBL] [Abstract][Full Text] [Related]
11. Circ2Disease: a manually curated database of experimentally validated circRNAs in human disease. Yao D; Zhang L; Zheng M; Sun X; Lu Y; Liu P Sci Rep; 2018 Jul; 8(1):11018. PubMed ID: 30030469 [TBL] [Abstract][Full Text] [Related]
12. Human gene coexpression landscape: confident network derived from tissue transcriptomic profiles. Prieto C; RisueƱo A; Fontanillo C; De las Rivas J PLoS One; 2008; 3(12):e3911. PubMed ID: 19081792 [TBL] [Abstract][Full Text] [Related]
13. Identification of Gene Regulatory Networks from Single-Cell Expression Data. Li S; Yan H; Lee J Methods Mol Biol; 2021; 2328():153-170. PubMed ID: 34251624 [TBL] [Abstract][Full Text] [Related]
14. Computational Identification of ceRNA and Reconstruction of ceRNA Regulatory Network Based on RNA-seq and Small RNA-seq Data in Plants. Wan X; Li Z Methods Mol Biol; 2021; 2328():261-275. PubMed ID: 34251632 [TBL] [Abstract][Full Text] [Related]
15. Disease gene prioritization by integrating tissue-specific molecular networks using a robust multi-network model. Ni J; Koyuturk M; Tong H; Haines J; Xu R; Zhang X BMC Bioinformatics; 2016 Nov; 17(1):453. PubMed ID: 27829360 [TBL] [Abstract][Full Text] [Related]
16. Tissue-aware data integration approach for the inference of pathway interactions in metazoan organisms. Park CY; Krishnan A; Zhu Q; Wong AK; Lee YS; Troyanskaya OG Bioinformatics; 2015 Apr; 31(7):1093-101. PubMed ID: 25431329 [TBL] [Abstract][Full Text] [Related]
17. Pathway-Based Single-Cell RNA-Seq Classification, Clustering, and Construction of Gene-Gene Interactions Networks Using Random Forests. Wang H; Sham P; Tong T; Pang H IEEE J Biomed Health Inform; 2020 Jun; 24(6):1814-1822. PubMed ID: 31581101 [TBL] [Abstract][Full Text] [Related]
18. SCDb: an integrated database of stomach cancer. Gu E; Song W; Liu A; Wang H BMC Cancer; 2020 Jun; 20(1):490. PubMed ID: 32487193 [TBL] [Abstract][Full Text] [Related]
19. DroID 2011: a comprehensive, integrated resource for protein, transcription factor, RNA and gene interactions for Drosophila. Murali T; Pacifico S; Yu J; Guest S; Roberts GG; Finley RL Nucleic Acids Res; 2011 Jan; 39(Database issue):D736-43. PubMed ID: 21036869 [TBL] [Abstract][Full Text] [Related]
20. Gene ORGANizer: linking genes to the organs they affect. Gokhman D; Kelman G; Amartely A; Gershon G; Tsur S; Carmel L Nucleic Acids Res; 2017 Jul; 45(W1):W138-W145. PubMed ID: 28444223 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]