These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

144 related articles for article (PubMed ID: 34850130)

  • 21. Efficient identification of multiple pathways: RNA-Seq analysis of livers from
    Nia AM; Chen T; Barnette BL; Khanipov K; Ullrich RL; Bhavnani SK; Emmett MR
    BMC Bioinformatics; 2020 Mar; 21(1):118. PubMed ID: 32192433
    [TBL] [Abstract][Full Text] [Related]  

  • 22. Simultaneous inference of phenotype-associated genes and relevant tissues from GWAS data via Bayesian integration of multiple tissue-specific gene networks.
    Wu M; Lin Z; Ma S; Chen T; Jiang R; Wong WH
    J Mol Cell Biol; 2017 Dec; 9(6):436-452. PubMed ID: 29300920
    [TBL] [Abstract][Full Text] [Related]  

  • 23. funRiceGenes dataset for comprehensive understanding and application of rice functional genes.
    Yao W; Li G; Yu Y; Ouyang Y
    Gigascience; 2018 Jan; 7(1):1-9. PubMed ID: 29220485
    [TBL] [Abstract][Full Text] [Related]  

  • 24. Benchmarking and Testing Machine Learning Approaches with BARRA:CuRDa, a
    Feltes BC; Poloni JF; Dorn M
    J Comput Biol; 2021 Sep; 28(9):931-944. PubMed ID: 34264745
    [No Abstract]   [Full Text] [Related]  

  • 25. TIMEOR: a web-based tool to uncover temporal regulatory mechanisms from multi-omics data.
    Conard AM; Goodman N; Hu Y; Perrimon N; Singh R; Lawrence C; Larschan E
    Nucleic Acids Res; 2021 Jul; 49(W1):W641-W653. PubMed ID: 34125906
    [TBL] [Abstract][Full Text] [Related]  

  • 26. A data integration approach to mapping OCT4 gene regulatory networks operative in embryonic stem cells and embryonal carcinoma cells.
    Jung M; Peterson H; Chavez L; Kahlem P; Lehrach H; Vilo J; Adjaye J
    PLoS One; 2010 May; 5(5):e10709. PubMed ID: 20505756
    [TBL] [Abstract][Full Text] [Related]  

  • 27. RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database.
    Bushel PR; Caiment F; Wu H; O'Lone R; Day F; Calley J; Smith A; Li J
    BMC Genomics; 2018 Nov; 19(1):825. PubMed ID: 30453895
    [TBL] [Abstract][Full Text] [Related]  

  • 28. Evaluation of critical data processing steps for reliable prediction of gene co-expression from large collections of RNA-seq data.
    Vandenbon A
    PLoS One; 2022; 17(1):e0263344. PubMed ID: 35089979
    [TBL] [Abstract][Full Text] [Related]  

  • 29. PAGER-CoV: a comprehensive collection of pathways, annotated gene-lists and gene signatures for coronavirus disease studies.
    Yue Z; Zhang E; Xu C; Khurana S; Batra N; Dang SDH; Cimino JJ; Chen JY
    Nucleic Acids Res; 2021 Jan; 49(D1):D589-D599. PubMed ID: 33245774
    [TBL] [Abstract][Full Text] [Related]  

  • 30. A patient-specific functional module and path identification technique from RNA-seq data.
    Azim R; Wang S; Dipu SA; Islam N; Ala Muid MR; Elahe MF; Li M
    Comput Biol Med; 2023 May; 158():106871. PubMed ID: 37030265
    [TBL] [Abstract][Full Text] [Related]  

  • 31. Genome-wide survey of tissue-specific microRNA and transcription factor regulatory networks in 12 tissues.
    Guo Z; Maki M; Ding R; Yang Y; Zhang B; Xiong L
    Sci Rep; 2014 Jun; 4():5150. PubMed ID: 24889152
    [TBL] [Abstract][Full Text] [Related]  

  • 32. Curating gene sets: challenges and opportunities for integrative analysis.
    Bubier J; Hill D; Mukherjee G; Reynolds T; Baker EJ; Berger A; Emerson J; Blake JA; Chesler EJ
    Database (Oxford); 2019 Jan; 2019():. PubMed ID: 30888410
    [TBL] [Abstract][Full Text] [Related]  

  • 33. scNPF: an integrative framework assisted by network propagation and network fusion for preprocessing of single-cell RNA-seq data.
    Ye W; Ji G; Ye P; Long Y; Xiao X; Li S; Su Y; Wu X
    BMC Genomics; 2019 May; 20(1):347. PubMed ID: 31068142
    [TBL] [Abstract][Full Text] [Related]  

  • 34. SFGD: a comprehensive platform for mining functional information from soybean transcriptome data and its use in identifying acyl-lipid metabolism pathways.
    Yu J; Zhang Z; Wei J; Ling Y; Xu W; Su Z
    BMC Genomics; 2014 Apr; 15():271. PubMed ID: 24712981
    [TBL] [Abstract][Full Text] [Related]  

  • 35. Verifying explainability of a deep learning tissue classifier trained on RNA-seq data.
    Yap M; Johnston RL; Foley H; MacDonald S; Kondrashova O; Tran KA; Nones K; Koufariotis LT; Bean C; Pearson JV; Trzaskowski M; Waddell N
    Sci Rep; 2021 Jan; 11(1):2641. PubMed ID: 33514769
    [TBL] [Abstract][Full Text] [Related]  

  • 36. EAGLE: An algorithm that utilizes a small number of genomic features to predict tissue/cell type-specific enhancer-gene interactions.
    Gao T; Qian J
    PLoS Comput Biol; 2019 Oct; 15(10):e1007436. PubMed ID: 31665135
    [TBL] [Abstract][Full Text] [Related]  

  • 37. Predicting gene regulatory networks of soybean nodulation from RNA-Seq transcriptome data.
    Zhu M; Dahmen JL; Stacey G; Cheng J
    BMC Bioinformatics; 2013 Sep; 14():278. PubMed ID: 24053776
    [TBL] [Abstract][Full Text] [Related]  

  • 38. SoyFN: a knowledge database of soybean functional networks.
    Xu Y; Guo M; Liu X; Wang C; Liu Y
    Database (Oxford); 2014; 2014():bau019. PubMed ID: 24618044
    [TBL] [Abstract][Full Text] [Related]  

  • 39. IC4R-2.0: Rice Genome Reannotation Using Massive RNA-seq Data.
    Sang J; Zou D; Wang Z; Wang F; Zhang Y; Xia L; Li Z; Ma L; Li M; Xu B; Liu X; Wu S; Liu L; Niu G; Li M; Luo Y; Hu S; Hao L; Zhang Z
    Genomics Proteomics Bioinformatics; 2020 Apr; 18(2):161-172. PubMed ID: 32683045
    [TBL] [Abstract][Full Text] [Related]  

  • 40. CLIPreg: constructing translational regulatory networks from CLIP-, Ribo- and RNA-seq.
    Kerouanton B; Schäfer S; Ho L; Chothani S; Rackham OJL
    Bioinformatics; 2022 Jul; 38(14):3651-3653. PubMed ID: 35652722
    [TBL] [Abstract][Full Text] [Related]  

    [Previous]   [Next]    [New Search]
    of 8.