203 related articles for article (PubMed ID: 34863780)
1. Real-Time Single-Molecule Studies of RNA Polymerase-Promoter Open Complex Formation Reveal Substantial Heterogeneity Along the Promoter-Opening Pathway.
Malinen AM; Bakermans J; Aalto-Setälä E; Blessing M; Bauer DLV; Parilova O; Belogurov GA; Dulin D; Kapanidis AN
J Mol Biol; 2022 Jan; 434(2):167383. PubMed ID: 34863780
[TBL] [Abstract][Full Text] [Related]
2. Cryo-EM structure of
Narayanan A; Vago FS; Li K; Qayyum MZ; Yernool D; Jiang W; Murakami KS
J Biol Chem; 2018 May; 293(19):7367-7375. PubMed ID: 29581236
[TBL] [Abstract][Full Text] [Related]
3. Stepwise Promoter Melting by Bacterial RNA Polymerase.
Chen J; Chiu C; Gopalkrishnan S; Chen AY; Olinares PDB; Saecker RM; Winkelman JT; Maloney MF; Chait BT; Ross W; Gourse RL; Campbell EA; Darst SA
Mol Cell; 2020 Apr; 78(2):275-288.e6. PubMed ID: 32160514
[TBL] [Abstract][Full Text] [Related]
4. Structural origins of
Saecker RM; Chen J; Chiu CE; Malone B; Sotiris J; Ebrahim M; Yen LY; Eng ET; Darst SA
Proc Natl Acad Sci U S A; 2021 Oct; 118(40):. PubMed ID: 34599106
[TBL] [Abstract][Full Text] [Related]
5. Structures of RNA Polymerase Closed and Intermediate Complexes Reveal Mechanisms of DNA Opening and Transcription Initiation.
Glyde R; Ye F; Darbari VC; Zhang N; Buck M; Zhang X
Mol Cell; 2017 Jul; 67(1):106-116.e4. PubMed ID: 28579332
[TBL] [Abstract][Full Text] [Related]
6. Temperature effects on RNA polymerase initiation kinetics reveal which open complex initiates and that bubble collapse is stepwise.
Plaskon DM; Henderson KL; Felth LC; Molzahn CM; Evensen C; Dyke S; Shkel IA; Record MT
Proc Natl Acad Sci U S A; 2021 Jul; 118(30):. PubMed ID: 34290140
[TBL] [Abstract][Full Text] [Related]
7. Structures of Bacterial RNA Polymerase Complexes Reveal the Mechanism of DNA Loading and Transcription Initiation.
Glyde R; Ye F; Jovanovic M; Kotta-Loizou I; Buck M; Zhang X
Mol Cell; 2018 Jun; 70(6):1111-1120.e3. PubMed ID: 29932903
[TBL] [Abstract][Full Text] [Related]
8. Coupling of downstream RNA polymerase-promoter interactions with formation of catalytically competent transcription initiation complex.
Mekler V; Minakhin L; Borukhov S; Mustaev A; Severinov K
J Mol Biol; 2014 Dec; 426(24):3973-3984. PubMed ID: 25311862
[TBL] [Abstract][Full Text] [Related]
9. Structure of a bacterial RNA polymerase holoenzyme open promoter complex.
Bae B; Feklistov A; Lass-Napiorkowska A; Landick R; Darst SA
Elife; 2015 Sep; 4():. PubMed ID: 26349032
[TBL] [Abstract][Full Text] [Related]
10. Effect of heparin and heparan sulphate on open promoter complex formation for a simple tandem gene model using ex situ atomic force microscopy.
Chammas O; Bonass WA; Thomson NH
Methods; 2017 May; 120():91-102. PubMed ID: 28434996
[TBL] [Abstract][Full Text] [Related]
11. Transcription initiation at a consensus bacterial promoter proceeds via a 'bind-unwind-load-and-lock' mechanism.
Mazumder A; Ebright RH; Kapanidis AN
Elife; 2021 Oct; 10():. PubMed ID: 34633286
[TBL] [Abstract][Full Text] [Related]
12. Quantitative parameters of bacterial RNA polymerase open-complex formation, stabilization and disruption on a consensus promoter.
Bera SC; America PPB; Maatsola S; Seifert M; Ostrofet E; Cnossen J; Spermann M; Papini FS; Depken M; Malinen AM; Dulin D
Nucleic Acids Res; 2022 Jul; 50(13):7511-7528. PubMed ID: 35819191
[TBL] [Abstract][Full Text] [Related]
13. Cooperativity and interaction energy threshold effects in recognition of the -10 promoter element by bacterial RNA polymerase.
Mekler V; Severinov K
Nucleic Acids Res; 2013 Aug; 41(15):7276-85. PubMed ID: 23771146
[TBL] [Abstract][Full Text] [Related]
14. Structural basis of σ
Gao F; Ye F; Zhang B; Cronin N; Buck M; Zhang X
Proc Natl Acad Sci U S A; 2024 Jan; 121(2):e2309670120. PubMed ID: 38170755
[TBL] [Abstract][Full Text] [Related]
15. Structures of an RNA polymerase promoter melting intermediate elucidate DNA unwinding.
Boyaci H; Chen J; Jansen R; Darst SA; Campbell EA
Nature; 2019 Jan; 565(7739):382-385. PubMed ID: 30626968
[TBL] [Abstract][Full Text] [Related]
16. E. coli RNA Polymerase Determinants of Open Complex Lifetime and Structure.
Ruff EF; Drennan AC; Capp MW; Poulos MA; Artsimovitch I; Record MT
J Mol Biol; 2015 Jul; 427(15):2435-2450. PubMed ID: 26055538
[TBL] [Abstract][Full Text] [Related]
17. Interaction of Escherichia coli RNA polymerase σ70 subunit with promoter elements in the context of free σ70, RNA polymerase holoenzyme, and the β'-σ70 complex.
Mekler V; Pavlova O; Severinov K
J Biol Chem; 2011 Jan; 286(1):270-9. PubMed ID: 20952386
[TBL] [Abstract][Full Text] [Related]
18. Conformational heterogeneity and bubble dynamics in single bacterial transcription initiation complexes.
Duchi D; Gryte K; Robb NC; Morichaud Z; Sheppard C; Brodolin K; Wigneshweraraj S; Kapanidis AN
Nucleic Acids Res; 2018 Jan; 46(2):677-688. PubMed ID: 29177430
[TBL] [Abstract][Full Text] [Related]
19. Key roles of the downstream mobile jaw of Escherichia coli RNA polymerase in transcription initiation.
Drennan A; Kraemer M; Capp M; Gries T; Ruff E; Sheppard C; Wigneshweraraj S; Artsimovitch I; Record MT
Biochemistry; 2012 Nov; 51(47):9447-59. PubMed ID: 23116321
[TBL] [Abstract][Full Text] [Related]
20. Interactions between RNA polymerase and the core recognition element are a determinant of transcription start site selection.
Vvedenskaya IO; Vahedian-Movahed H; Zhang Y; Taylor DM; Ebright RH; Nickels BE
Proc Natl Acad Sci U S A; 2016 May; 113(21):E2899-905. PubMed ID: 27162333
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]