These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
131 related articles for article (PubMed ID: 34931186)
1. TopHap: Rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity. Caraballo-Ortiz MA; Miura S; Sanderford M; Dolker T; Tao Q; Weaver S; Pond SLK; Kumar S bioRxiv; 2021 Dec; ():. PubMed ID: 34931186 [TBL] [Abstract][Full Text] [Related]
2. TopHap: rapid inference of key phylogenetic structures from common haplotypes in large genome collections with limited diversity. Caraballo-Ortiz MA; Miura S; Sanderford M; Dolker T; Tao Q; Weaver S; Pond SLK; Kumar S Bioinformatics; 2022 May; 38(10):2719-2726. PubMed ID: 35561179 [TBL] [Abstract][Full Text] [Related]
3. Taxonium, a web-based tool for exploring large phylogenetic trees. Sanderson T Elife; 2022 Nov; 11():. PubMed ID: 36377483 [TBL] [Abstract][Full Text] [Related]
5. Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations. Kramer AM; Thornlow B; Ye C; De Maio N; McBroome J; Hinrichs AS; Lanfear R; Turakhia Y; Corbett-Detig R Syst Biol; 2023 Nov; 72(5):1039-1051. PubMed ID: 37232476 [TBL] [Abstract][Full Text] [Related]
6. Online Phylogenetics using Parsimony Produces Slightly Better Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than Thornlow B; Kramer A; Ye C; De Maio N; McBroome J; Hinrichs AS; Lanfear R; Turakhia Y; Corbett-Detig R bioRxiv; 2022 May; ():. PubMed ID: 35611334 [TBL] [Abstract][Full Text] [Related]
7. Evolutionary and Phylogenetic Dynamics of SARS-CoV-2 Variants: A Genetic Comparative Study of Taiyuan and Wuhan Cities of China. Hussain B; Wu C Viruses; 2024 Jun; 16(6):. PubMed ID: 38932199 [TBL] [Abstract][Full Text] [Related]
8. European context of the diversity and phylogenetic position of SARS-CoV-2 sequences from Polish COVID-19 patients. Hryhorowicz S; Ustaszewski A; Kaczmarek-Ryś M; Lis E; Witt M; Pławski A; Ziętkiewicz E J Appl Genet; 2021 May; 62(2):327-337. PubMed ID: 33400131 [TBL] [Abstract][Full Text] [Related]
13. Re-emergence of Gamma-like-II and emergence of Gamma-S:E661D SARS-CoV-2 lineages in the south of Brazil after the 2021 outbreak. Oliveira MM; Schemberger MO; Suzukawa AA; Riediger IN; do Carmo Debur M; Becker G; Resende PC; Gräf T; Balsanelli E; de Baura VA; de Souza EM; Pedrosa FO; Alves LR; Blanes L; Nardelli SC; Aguiar AM; Albrecht L; Zanette D; Ávila AR; Morello LG; Marchini FK; Dos Santos HG; Passetti F; Dallagiovanna B; Faoro H Virol J; 2021 Nov; 18(1):222. PubMed ID: 34789293 [TBL] [Abstract][Full Text] [Related]
14. A large-scale population based organelle pan-genomes construction and phylogeny analysis reveal the genetic diversity and the evolutionary origins of chloroplast and mitochondrion in Brassica napus L. Liu H; Zhao W; Hua W; Liu J BMC Genomics; 2022 Apr; 23(1):339. PubMed ID: 35501686 [TBL] [Abstract][Full Text] [Related]
15. Patterns of within-host genetic diversity in SARS-CoV-2. Tonkin-Hill G; Martincorena I; Amato R; Lawson ARJ; Gerstung M; Johnston I; Jackson DK; Park N; Lensing SV; Quail MA; Gonçalves S; Ariani C; Spencer Chapman M; Hamilton WL; Meredith LW; Hall G; Jahun AS; Chaudhry Y; Hosmillo M; Pinckert ML; Georgana I; Yakovleva A; Caller LG; Caddy SL; Feltwell T; Khokhar FA; Houldcroft CJ; Curran MD; Parmar S; ; Alderton A; Nelson R; Harrison EM; Sillitoe J; Bentley SD; Barrett JC; Torok ME; Goodfellow IG; Langford C; Kwiatkowski D; Elife; 2021 Aug; 10():. PubMed ID: 34387545 [TBL] [Abstract][Full Text] [Related]
16. Evolutionary Tracking of SARS-CoV-2 Genetic Variants Highlights an Intricate Balance of Stabilizing and Destabilizing Mutations. Jacob JJ; Vasudevan K; Pragasam AK; Gunasekaran K; Veeraraghavan B; Mutreja A mBio; 2021 Aug; 12(4):e0118821. PubMed ID: 34281387 [TBL] [Abstract][Full Text] [Related]
17. Phylogenetic signatures reveal multilevel selection and fitness costs in SARS-CoV-2. Bonetti Franceschi V; Volz E Wellcome Open Res; 2024; 9():85. PubMed ID: 39132669 [TBL] [Abstract][Full Text] [Related]
18. BPhyOG: an interactive server for genome-wide inference of bacterial phylogenies based on overlapping genes. Luo Y; Fu C; Zhang DY; Lin K BMC Bioinformatics; 2007 Jul; 8():266. PubMed ID: 17650344 [TBL] [Abstract][Full Text] [Related]
19. A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees. McBroome J; Thornlow B; Hinrichs AS; Kramer A; De Maio N; Goldman N; Haussler D; Corbett-Detig R; Turakhia Y Mol Biol Evol; 2021 Dec; 38(12):5819-5824. PubMed ID: 34469548 [TBL] [Abstract][Full Text] [Related]
20. Invariant transformers of Robinson and Foulds distance matrices for Convolutional Neural Network. Tahiri N; Veriga A; Koshkarov A; Morozov B J Bioinform Comput Biol; 2022 Aug; 20(4):2250012. PubMed ID: 35798684 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]