211 related articles for article (PubMed ID: 34937911)
1. The fluorescent aptamer Squash extensively repurposes the adenine riboswitch fold.
Truong L; Kooshapur H; Dey SK; Li X; Tjandra N; Jaffrey SR; Ferré-D'Amaré AR
Nat Chem Biol; 2022 Feb; 18(2):191-198. PubMed ID: 34937911
[TBL] [Abstract][Full Text] [Related]
2. Repurposing an adenine riboswitch into a fluorogenic imaging and sensing tag.
Dey SK; Filonov GS; Olarerin-George AO; Jackson BT; Finley LWS; Jaffrey SR
Nat Chem Biol; 2022 Feb; 18(2):180-190. PubMed ID: 34937909
[TBL] [Abstract][Full Text] [Related]
3. A structural intermediate pre-organizes the add adenine riboswitch for ligand recognition.
St-Pierre P; Shaw E; Jacques S; Dalgarno PA; Perez-Gonzalez C; Picard-Jean F; Penedo JC; Lafontaine DA
Nucleic Acids Res; 2021 Jun; 49(10):5891-5904. PubMed ID: 33963862
[TBL] [Abstract][Full Text] [Related]
4. Core requirements of the adenine riboswitch aptamer for ligand binding.
Lemay JF; Lafontaine DA
RNA; 2007 Mar; 13(3):339-50. PubMed ID: 17200422
[TBL] [Abstract][Full Text] [Related]
5. Relative stability of helices determines the folding landscape of adenine riboswitch aptamers.
Lin JC; Thirumalai D
J Am Chem Soc; 2008 Oct; 130(43):14080-1. PubMed ID: 18828635
[TBL] [Abstract][Full Text] [Related]
6. Thermodynamic and kinetic characterization of ligand binding to the purine riboswitch aptamer domain.
Gilbert SD; Stoddard CD; Wise SJ; Batey RT
J Mol Biol; 2006 Jun; 359(3):754-68. PubMed ID: 16650860
[TBL] [Abstract][Full Text] [Related]
7. Fluorogenic aptamers resolve the flexibility of RNA junctions using orientation-dependent FRET.
Jeng SCY; Trachman RJ; Weissenboeck F; Truong L; Link KA; Jepsen MDE; Knutson JR; Andersen ES; Ferré-D'Amaré AR; Unrau PJ
RNA; 2021 Apr; 27(4):433-444. PubMed ID: 33376189
[TBL] [Abstract][Full Text] [Related]
8. Conformational flexibility of adenine riboswitch aptamer in apo and bound states using NMR and an X-ray free electron laser.
Ding J; Swain M; Yu P; Stagno JR; Wang YX
J Biomol NMR; 2019 Sep; 73(8-9):509-518. PubMed ID: 31606878
[TBL] [Abstract][Full Text] [Related]
9. Metal-ion binding and metal-ion induced folding of the adenine-sensing riboswitch aptamer domain.
Noeske J; Schwalbe H; Wöhnert J
Nucleic Acids Res; 2007; 35(15):5262-73. PubMed ID: 17686787
[TBL] [Abstract][Full Text] [Related]
10. Folding of the adenine riboswitch.
Lemay JF; Penedo JC; Tremblay R; Lilley DM; Lafontaine DA
Chem Biol; 2006 Aug; 13(8):857-68. PubMed ID: 16931335
[TBL] [Abstract][Full Text] [Related]
11. Ligand-modulated folding of the full-length adenine riboswitch probed by NMR and single-molecule FRET spectroscopy.
Warhaut S; Mertinkus KR; Höllthaler P; Fürtig B; Heilemann M; Hengesbach M; Schwalbe H
Nucleic Acids Res; 2017 May; 45(9):5512-5522. PubMed ID: 28204648
[TBL] [Abstract][Full Text] [Related]
12. Riboswitch structure: an internal residue mimicking the purine ligand.
Delfosse V; Bouchard P; Bonneau E; Dagenais P; Lemay JF; Lafontaine DA; Legault P
Nucleic Acids Res; 2010 Apr; 38(6):2057-68. PubMed ID: 20022916
[TBL] [Abstract][Full Text] [Related]
13. The importance of helix P1 stability for structural pre-organization and ligand binding affinity of the adenine riboswitch aptamer domain.
Nozinovic S; Reining A; Kim YB; Noeske J; Schlepckow K; Wöhnert J; Schwalbe H
RNA Biol; 2014; 11(5):655-6. PubMed ID: 24921630
[TBL] [Abstract][Full Text] [Related]
14. Direct observation of hierarchical folding in single riboswitch aptamers.
Greenleaf WJ; Frieda KL; Foster DA; Woodside MT; Block SM
Science; 2008 Feb; 319(5863):630-3. PubMed ID: 18174398
[TBL] [Abstract][Full Text] [Related]
15. Ligand Binding Mechanism and Its Relationship with Conformational Changes in Adenine Riboswitch.
Hu G; Li H; Xu S; Wang J
Int J Mol Sci; 2020 Mar; 21(6):. PubMed ID: 32168940
[TBL] [Abstract][Full Text] [Related]
16. Using Rosetta for RNA homology modeling.
Watkins AM; Rangan R; Das R
Methods Enzymol; 2019; 623():177-207. PubMed ID: 31239046
[TBL] [Abstract][Full Text] [Related]
17. Molecular dynamics simulation of the binding process of ligands to the add adenine riboswitch aptamer.
Bao L; Wang J; Xiao Y
Phys Rev E; 2019 Aug; 100(2-1):022412. PubMed ID: 31574664
[TBL] [Abstract][Full Text] [Related]
18. MD simulations of ligand-bound and ligand-free aptamer: molecular level insights into the binding and switching mechanism of the add A-riboswitch.
Sharma M; Bulusu G; Mitra A
RNA; 2009 Sep; 15(9):1673-92. PubMed ID: 19625387
[TBL] [Abstract][Full Text] [Related]
19. Requirements for efficient ligand-gated co-transcriptional switching in designed variants of the B. subtilis pbuE adenine-responsive riboswitch in E. coli.
Drogalis LK; Batey RT
PLoS One; 2020; 15(12):e0243155. PubMed ID: 33259551
[TBL] [Abstract][Full Text] [Related]
20. Single-molecule force spectroscopy of the add adenine riboswitch relates folding to regulatory mechanism.
Neupane K; Yu H; Foster DA; Wang F; Woodside MT
Nucleic Acids Res; 2011 Sep; 39(17):7677-87. PubMed ID: 21653559
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]