These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

172 related articles for article (PubMed ID: 34962393)

  • 1. Improved Parameterization of Phosphatidylinositide Lipid Headgroups for the Martini 3 Coarse-Grain Force Field.
    Borges-Araújo L; Souza PCT; Fernandes F; Melo MN
    J Chem Theory Comput; 2022 Jan; 18(1):357-373. PubMed ID: 34962393
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Capturing Choline-Aromatics Cation-π Interactions in the MARTINI Force Field.
    Khan HM; Souza PCT; Thallmair S; Barnoud J; de Vries AH; Marrink SJ; Reuter N
    J Chem Theory Comput; 2020 Apr; 16(4):2550-2560. PubMed ID: 32096995
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Evaluating Coarse-Grained MARTINI Force-Fields for Capturing the Ripple Phase of Lipid Membranes.
    Sharma P; Desikan R; Ayappa KG
    J Phys Chem B; 2021 Jun; 125(24):6587-6599. PubMed ID: 34081861
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Short Peptide Self-Assembly in the Martini Coarse-Grain Force Field Family.
    van Teijlingen A; Smith MC; Tuttle T
    Acc Chem Res; 2023 Mar; 56(6):644-654. PubMed ID: 36866851
    [TBL] [Abstract][Full Text] [Related]  

  • 5. The Martini coarse-grained force field.
    Periole X; Marrink SJ
    Methods Mol Biol; 2013; 924():533-65. PubMed ID: 23034762
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Ganglioside-Lipid and Ganglioside-Protein Interactions Revealed by Coarse-Grained and Atomistic Molecular Dynamics Simulations.
    Gu RX; Ingólfsson HI; de Vries AH; Marrink SJ; Tieleman DP
    J Phys Chem B; 2017 Apr; 121(15):3262-3275. PubMed ID: 27610460
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Atomistic and Coarse Grain Simulations of the Cell Envelope of Gram-Negative Bacteria: What Have We Learned?
    Khalid S; Piggot TJ; Samsudin F
    Acc Chem Res; 2019 Jan; 52(1):180-188. PubMed ID: 30562009
    [TBL] [Abstract][Full Text] [Related]  

  • 8. CHARMM-GUI Martini Maker for Coarse-Grained Simulations with the Martini Force Field.
    Qi Y; Ingólfsson HI; Cheng X; Lee J; Marrink SJ; Im W
    J Chem Theory Comput; 2015 Sep; 11(9):4486-94. PubMed ID: 26575938
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Improved prediction of bilayer and monolayer properties using a refined BMW-MARTINI force field.
    Miguel V; Perillo MA; Villarreal MA
    Biochim Biophys Acta; 2016 Nov; 1858(11):2903-2910. PubMed ID: 27591685
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Assessing the Martini 3 protein model: A review of its path and potential.
    Borges-Araújo L; Pereira GP; Valério M; Souza PCT
    Biochim Biophys Acta Proteins Proteom; 2024 Jul; 1872(4):141014. PubMed ID: 38670324
    [TBL] [Abstract][Full Text] [Related]  

  • 11. An implementation of the Martini coarse-grained force field in OpenMM.
    MacCallum JL; Hu S; Lenz S; Souza PCT; Corradi V; Tieleman DP
    Biophys J; 2023 Jul; 122(14):2864-2870. PubMed ID: 37050876
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Optimizing Gō-MARTINI Coarse-Grained Model for F-BAR Protein on Lipid Membrane.
    Mahmood MI; Poma AB; Okazaki KI
    Front Mol Biosci; 2021; 8():619381. PubMed ID: 33693028
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Extending the Martini Coarse-Grained Force Field to
    Shivgan AT; Marzinek JK; Huber RG; Krah A; Henchman RH; Matsudaira P; Verma CS; Bond PJ
    J Chem Inf Model; 2020 Aug; 60(8):3864-3883. PubMed ID: 32702979
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Curvature Footprints of Transmembrane Proteins in Simulations with the Martini Force Field.
    Cino EA; Tieleman DP
    J Phys Chem B; 2024 Jun; 128(25):5987-5994. PubMed ID: 38860934
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Parameterization of Palmitoylated Cysteine, Farnesylated Cysteine, Geranylgeranylated Cysteine, and Myristoylated Glycine for the Martini Force Field.
    Atsmon-Raz Y; Tieleman DP
    J Phys Chem B; 2017 Dec; 121(49):11132-11143. PubMed ID: 29144135
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Faster but Not Sweeter: A Model of
    Brandner AF; Prakaash D; Blanco González A; Waterhouse F; Khalid S
    J Chem Theory Comput; 2024 Aug; 20(15):6890-6903. PubMed ID: 39008538
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Addressing the Excessive Aggregation of Membrane Proteins in the MARTINI Model.
    Majumder A; Straub JE
    J Chem Theory Comput; 2021 Apr; 17(4):2513-2521. PubMed ID: 33720709
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A New Coarse-Grained Force Field for Membrane-Peptide Simulations.
    Wu Z; Cui Q; Yethiraj A
    J Chem Theory Comput; 2011 Nov; 7(11):3793-802. PubMed ID: 26598270
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Reconciling structural and thermodynamic predictions using all-atom and coarse-grain force fields: the case of charged oligo-arginine translocation into DMPC bilayers.
    Hu Y; Sinha SK; Patel S
    J Phys Chem B; 2014 Oct; 118(41):11973-92. PubMed ID: 25290376
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Dry Martini, a coarse-grained force field for lipid membrane simulations with implicit solvent.
    Arnarez C; Uusitalo JJ; Masman MF; Ingólfsson HI; de Jong DH; Melo MN; Periole X; de Vries AH; Marrink SJ
    J Chem Theory Comput; 2015 Jan; 11(1):260-75. PubMed ID: 26574224
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.