214 related articles for article (PubMed ID: 34963427)
21. Comparison of different hypervariable regions of 16S rRNA for taxonomic profiling of vaginal microbiota using next-generation sequencing.
Sirichoat A; Sankuntaw N; Engchanil C; Buppasiri P; Faksri K; Namwat W; Chantratita W; Lulitanond V
Arch Microbiol; 2021 Apr; 203(3):1159-1166. PubMed ID: 33221964
[TBL] [Abstract][Full Text] [Related]
22. Every base matters: assessing small subunit rRNA primers for marine microbiomes with mock communities, time series and global field samples.
Parada AE; Needham DM; Fuhrman JA
Environ Microbiol; 2016 May; 18(5):1403-14. PubMed ID: 26271760
[TBL] [Abstract][Full Text] [Related]
23. 16S rRNA gene sequencing of mock microbial populations- impact of DNA extraction method, primer choice and sequencing platform.
Fouhy F; Clooney AG; Stanton C; Claesson MJ; Cotter PD
BMC Microbiol; 2016 Jun; 16(1):123. PubMed ID: 27342980
[TBL] [Abstract][Full Text] [Related]
24. Design and evaluation of universal 16S rRNA gene primers for high-throughput sequencing to simultaneously detect DAMO microbes and anammox bacteria.
Lu YZ; Ding ZW; Ding J; Fu L; Zeng RJ
Water Res; 2015 Dec; 87():385-94. PubMed ID: 26454634
[TBL] [Abstract][Full Text] [Related]
25. High-quality single amplicon sequencing method for illumina MiSeq platform using pool of 'N' (0-10) spacer-linked target specific primers without PhiX spike-in.
Naik T; Sharda M; C P L; Virbhadra K; Pandit A
BMC Genomics; 2023 Mar; 24(1):141. PubMed ID: 36959538
[TBL] [Abstract][Full Text] [Related]
26. Composition and diversity analysis of the lung microbiome in patients with suspected ventilator-associated pneumonia.
Fenn D; Abdel-Aziz MI; van Oort PMP; Brinkman P; Ahmed WM; Felton T; Artigas A; Póvoa P; Martin-Loeches I; Schultz MJ; Dark P; Fowler SJ; Bos LDJ;
Crit Care; 2022 Jul; 26(1):203. PubMed ID: 35794610
[TBL] [Abstract][Full Text] [Related]
27. Optimisation of 16S rRNA gut microbiota profiling of extremely low birth weight infants.
Alcon-Giner C; Caim S; Mitra S; Ketskemety J; Wegmann U; Wain J; Belteki G; Clarke P; Hall LJ
BMC Genomics; 2017 Nov; 18(1):841. PubMed ID: 29096601
[TBL] [Abstract][Full Text] [Related]
28. Improved Bacterial 16S rRNA Gene (V4 and V4-5) and Fungal Internal Transcribed Spacer Marker Gene Primers for Microbial Community Surveys.
Walters W; Hyde ER; Berg-Lyons D; Ackermann G; Humphrey G; Parada A; Gilbert JA; Jansson JK; Caporaso JG; Fuhrman JA; Apprill A; Knight R
mSystems; 2016; 1(1):. PubMed ID: 27822518
[TBL] [Abstract][Full Text] [Related]
29. The dynamics of the pulmonary microbiome during mechanical ventilation in the intensive care unit and the association with occurrence of pneumonia.
Zakharkina T; Martin-Loeches I; Matamoros S; Povoa P; Torres A; Kastelijn JB; Hofstra JJ; de Wever B; de Jong M; Schultz MJ; Sterk PJ; Artigas A; Bos LDJ
Thorax; 2017 Sep; 72(9):803-810. PubMed ID: 28100714
[TBL] [Abstract][Full Text] [Related]
30. Lung Microbiota Predict Clinical Outcomes in Critically Ill Patients.
Dickson RP; Schultz MJ; van der Poll T; Schouten LR; Falkowski NR; Luth JE; Sjoding MW; Brown CA; Chanderraj R; Huffnagle GB; Bos LDJ;
Am J Respir Crit Care Med; 2020 Mar; 201(5):555-563. PubMed ID: 31973575
[No Abstract] [Full Text] [Related]
31. Variations of the lung microbiome and immune response in mechanically ventilated surgical patients.
Huebinger RM; Smith AD; Zhang Y; Monson NL; Ireland SJ; Barber RC; Kubasiak JC; Minshall CT; Minei JP; Wolf SE; Allen MS
PLoS One; 2018; 13(10):e0205788. PubMed ID: 30356313
[TBL] [Abstract][Full Text] [Related]
32. A comparison of sequencing platforms and bioinformatics pipelines for compositional analysis of the gut microbiome.
Allali I; Arnold JW; Roach J; Cadenas MB; Butz N; Hassan HM; Koci M; Ballou A; Mendoza M; Ali R; Azcarate-Peril MA
BMC Microbiol; 2017 Sep; 17(1):194. PubMed ID: 28903732
[TBL] [Abstract][Full Text] [Related]
33. Development of a prokaryotic universal primer for simultaneous analysis of Bacteria and Archaea using next-generation sequencing.
Takahashi S; Tomita J; Nishioka K; Hisada T; Nishijima M
PLoS One; 2014; 9(8):e105592. PubMed ID: 25144201
[TBL] [Abstract][Full Text] [Related]
34. Evaluation of 16S rRNA amplicon sequencing using two next-generation sequencing technologies for phylogenetic analysis of the rumen bacterial community in steers.
Myer PR; Kim M; Freetly HC; Smith TPL
J Microbiol Methods; 2016 Aug; 127():132-140. PubMed ID: 27282101
[TBL] [Abstract][Full Text] [Related]
35. Analysis, optimization and verification of Illumina-generated 16S rRNA gene amplicon surveys.
Nelson MC; Morrison HG; Benjamino J; Grim SL; Graf J
PLoS One; 2014; 9(4):e94249. PubMed ID: 24722003
[TBL] [Abstract][Full Text] [Related]
36. [Analysis of the dynamic changes in gut microbiota in patients with extremely severe burns by 16S ribosomal RNA high-throughput sequencing technology].
Pan YY; Fan YF; Li JL; Cui SY; Huang N; Jin GY; Chen C; Zhang C
Zhonghua Shao Shang Za Zhi; 2020 Dec; 36(12):1159-1166. PubMed ID: 33379852
[No Abstract] [Full Text] [Related]
37. Multi-amplicon microbiome data analysis pipelines for mixed orientation sequences using QIIME2: Assessing reference database, variable region and pre-processing bias in classification of mock bacterial community samples.
Maki KA; Wolff B; Varuzza L; Green SJ; Barb JJ
PLoS One; 2023; 18(1):e0280293. PubMed ID: 36638095
[TBL] [Abstract][Full Text] [Related]
38. The skin microbiome in psoriatic arthritis: methodology development and pilot data.
Castelino M; Eyre S; Moat J; Fox G; Martin P; Ijaz U; Quince C; Ho P; Upton M; Barton A
Lancet; 2015 Feb; 385 Suppl 1():S27. PubMed ID: 26312849
[TBL] [Abstract][Full Text] [Related]
39. The lung microbiome in patients with pneumocystosis.
Kehrmann J; Veckollari B; Schmidt D; Schildgen O; Schildgen V; Wagner N; Zeschnigk M; Klein-Hitpass L; Witzke O; Buer J; Steinmann J
BMC Pulm Med; 2017 Dec; 17(1):170. PubMed ID: 29202739
[TBL] [Abstract][Full Text] [Related]
40. Intrinsic challenges in ancient microbiome reconstruction using 16S rRNA gene amplification.
Ziesemer KA; Mann AE; Sankaranarayanan K; Schroeder H; Ozga AT; Brandt BW; Zaura E; Waters-Rist A; Hoogland M; Salazar-García DC; Aldenderfer M; Speller C; Hendy J; Weston DA; MacDonald SJ; Thomas GH; Collins MJ; Lewis CM; Hofman C; Warinner C
Sci Rep; 2015 Nov; 5():16498. PubMed ID: 26563586
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
