258 related articles for article (PubMed ID: 34991709)
1. T cell receptor beta germline variability is revealed by inference from repertoire data.
Omer A; Peres A; Rodriguez OL; Watson CT; Lees W; Polak P; Collins AM; Yaari G
Genome Med; 2022 Jan; 14(1):2. PubMed ID: 34991709
[TBL] [Abstract][Full Text] [Related]
2. Inferred Allelic Variants of Immunoglobulin Receptor Genes: A System for Their Evaluation, Documentation, and Naming.
Ohlin M; Scheepers C; Corcoran M; Lees WD; Busse CE; Bagnara D; Thörnqvist L; Bürckert JP; Jackson KJL; Ralph D; Schramm CA; Marthandan N; Breden F; Scott J; Matsen Iv FA; Greiff V; Yaari G; Kleinstein SH; Christley S; Sherkow JS; Kossida S; Lefranc MP; van Zelm MC; Watson CT; Collins AM
Front Immunol; 2019; 10():435. PubMed ID: 30936866
[TBL] [Abstract][Full Text] [Related]
3. The CAIRR Pipeline for Submitting Standards-Compliant B and T Cell Receptor Repertoire Sequencing Studies to the National Center for Biotechnology Information Repositories.
Bukhari SAC; O'Connor MJ; Martínez-Romero M; Egyedi AL; Willrett D; Graybeal J; Musen MA; Rubelt F; Cheung KH; Kleinstein SH
Front Immunol; 2018; 9():1877. PubMed ID: 30166985
[TBL] [Abstract][Full Text] [Related]
4. A new high-throughput sequencing method for determining diversity and similarity of T cell receptor (TCR) α and β repertoires and identifying potential new invariant TCR α chains.
Kitaura K; Shini T; Matsutani T; Suzuki R
BMC Immunol; 2016 Oct; 17(1):38. PubMed ID: 27729009
[TBL] [Abstract][Full Text] [Related]
5. Overview of the Germline and Expressed Repertoires of the TRB Genes in
Massari S; Bellini M; Ciccarese S; Antonacci R
Front Immunol; 2018; 9():2526. PubMed ID: 30455691
[TBL] [Abstract][Full Text] [Related]
6. A Comprehensive Annotation of the Channel Catfish (
Crider J; Quiniou SMA; Felch KL; Showmaker K; Bengtén E; Wilson M
Front Immunol; 2021; 12():786402. PubMed ID: 34899754
[TBL] [Abstract][Full Text] [Related]
7. Identification of Subject-Specific Immunoglobulin Alleles From Expressed Repertoire Sequencing Data.
Gadala-Maria D; Gidoni M; Marquez S; Vander Heiden JA; Kos JT; Watson CT; O'Connor KC; Yaari G; Kleinstein SH
Front Immunol; 2019; 10():129. PubMed ID: 30814994
[TBL] [Abstract][Full Text] [Related]
8. Complete characterization of the human immune cell transcriptome using accurate full-length cDNA sequencing.
Cole C; Byrne A; Adams M; Volden R; Vollmers C
Genome Res; 2020 Apr; 30(4):589-601. PubMed ID: 32312742
[TBL] [Abstract][Full Text] [Related]
9. High-Quality Library Preparation for NGS-Based Immunoglobulin Germline Gene Inference and Repertoire Expression Analysis.
Vázquez Bernat N; Corcoran M; Hardt U; Kaduk M; Phad GE; Martin M; Karlsson Hedestam GB
Front Immunol; 2019; 10():660. PubMed ID: 31024532
[TBL] [Abstract][Full Text] [Related]
10. Germline-Encoded TCR-MHC Contacts Promote TCR V Gene Bias in Umbilical Cord Blood T Cell Repertoire.
Gao K; Chen L; Zhang Y; Zhao Y; Wan Z; Wu J; Lin L; Kuang Y; Lu J; Zhang X; Tian L; Liu X; Qiu X
Front Immunol; 2019; 10():2064. PubMed ID: 31543879
[TBL] [Abstract][Full Text] [Related]
11. Adaptive Immune Receptor Repertoire (AIRR) Community Guide to TR and IG Gene Annotation.
Babrak L; Marquez S; Busse CE; Lees WD; Miho E; Ohlin M; Rosenfeld AM; Stervbo U; Watson CT; Schramm CA;
Methods Mol Biol; 2022; 2453():279-296. PubMed ID: 35622332
[TBL] [Abstract][Full Text] [Related]
12. IMPre: An Accurate and Efficient Software for Prediction of T- and B-Cell Receptor Germline Genes and Alleles from Rearranged Repertoire Data.
Zhang W; Wang IM; Wang C; Lin L; Chai X; Wu J; Bett AJ; Dhanasekaran G; Casimiro DR; Liu X
Front Immunol; 2016; 7():457. PubMed ID: 27867380
[TBL] [Abstract][Full Text] [Related]
13. iReceptor: A platform for querying and analyzing antibody/B-cell and T-cell receptor repertoire data across federated repositories.
Corrie BD; Marthandan N; Zimonja B; Jaglale J; Zhou Y; Barr E; Knoetze N; Breden FMW; Christley S; Scott JK; Cowell LG; Breden F
Immunol Rev; 2018 Jul; 284(1):24-41. PubMed ID: 29944754
[TBL] [Abstract][Full Text] [Related]
14. A Framework for Annotation of Antigen Specificities in High-Throughput T-Cell Repertoire Sequencing Studies.
Pogorelyy MV; Shugay M
Front Immunol; 2019; 10():2159. PubMed ID: 31616409
[TBL] [Abstract][Full Text] [Related]
15. Current status and recent advances of next generation sequencing techniques in immunological repertoire.
Hou XL; Wang L; Ding YL; Xie Q; Diao HY
Genes Immun; 2016 Apr; 17(3):153-64. PubMed ID: 26963138
[TBL] [Abstract][Full Text] [Related]
16. Tools for fundamental analysis functions of TCR repertoires: a systematic comparison.
Zhang Y; Yang X; Zhang Y; Zhang Y; Wang M; Ou JX; Zhu Y; Zeng H; Wu J; Lan C; Zhou HW; Yang W; Zhang Z
Brief Bioinform; 2020 Sep; 21(5):1706-1716. PubMed ID: 31624828
[TBL] [Abstract][Full Text] [Related]
17. Systematic evaluation of B-cell clonal family inference approaches.
Balashova D; van Schaik BDC; Stratigopoulou M; Guikema JEJ; Caniels TG; Claireaux M; van Gils MJ; Musters A; Anang DC; de Vries N; Greiff V; van Kampen AHC
BMC Immunol; 2024 Feb; 25(1):13. PubMed ID: 38331731
[TBL] [Abstract][Full Text] [Related]
18. Annotation of pseudogenic gene segments by massively parallel sequencing of rearranged lymphocyte receptor loci.
Dean J; Emerson RO; Vignali M; Sherwood AM; Rieder MJ; Carlson CS; Robins HS
Genome Med; 2015 Nov; 7():123. PubMed ID: 26596423
[TBL] [Abstract][Full Text] [Related]
19. Ultrasensitive allele inference from immune repertoire sequencing data with MiXCR.
Mikelov A; Nefediev G; Tashkeev A; Rodriguez OL; Ortmans DA; Skatova V; Izraelson M; Davydov A; Poslavsky S; Rahmouni S; Watson CT; Chudakov D; Boyd SD; Bolotin D
bioRxiv; 2023 Nov; ():. PubMed ID: 38014266
[TBL] [Abstract][Full Text] [Related]
20. AIRR Community Standardized Representations for Annotated Immune Repertoires.
Vander Heiden JA; Marquez S; Marthandan N; Bukhari SAC; Busse CE; Corrie B; Hershberg U; Kleinstein SH; Matsen Iv FA; Ralph DK; Rosenfeld AM; Schramm CA; ; Christley S; Laserson U
Front Immunol; 2018; 9():2206. PubMed ID: 30323809
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
