183 related articles for article (PubMed ID: 35013176)
1. Polyply; a python suite for facilitating simulations of macromolecules and nanomaterials.
Grünewald F; Alessandri R; Kroon PC; Monticelli L; Souza PCT; Marrink SJ
Nat Commun; 2022 Jan; 13(1):68. PubMed ID: 35013176
[TBL] [Abstract][Full Text] [Related]
2. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
Foffi G; Pastore A; Piazza F; Temussi PA
Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
[TBL] [Abstract][Full Text] [Related]
3. Protocols for Molecular Dynamics Simulations of RNA Nanostructures.
Kim T; Kasprzak WK; Shapiro BA
Methods Mol Biol; 2017; 1632():33-64. PubMed ID: 28730431
[TBL] [Abstract][Full Text] [Related]
4. Molecular dynamics simulations and applications in computational toxicology and nanotoxicology.
Selvaraj C; Sakkiah S; Tong W; Hong H
Food Chem Toxicol; 2018 Feb; 112():495-506. PubMed ID: 28843597
[TBL] [Abstract][Full Text] [Related]
5. DOT2: Macromolecular docking with improved biophysical models.
Roberts VA; Thompson EE; Pique ME; Perez MS; Ten Eyck LF
J Comput Chem; 2013 Jul; 34(20):1743-58. PubMed ID: 23695987
[TBL] [Abstract][Full Text] [Related]
6. Lipid converter, a framework for lipid manipulations in molecular dynamics simulations.
Larsson P; Kasson PM
J Membr Biol; 2014 Nov; 247(11):1137-40. PubMed ID: 25081234
[TBL] [Abstract][Full Text] [Related]
7. Molecular Simulations Guidelines for Biological Nanomaterials: From Peptides to Membranes.
Marzuoli I; Fraternali F
Methods Mol Biol; 2021; 2208():81-100. PubMed ID: 32856257
[TBL] [Abstract][Full Text] [Related]
8. Controlling the localization of polymer-functionalized nanoparticles in mixed lipid/polymer membranes.
Olubummo A; Schulz M; Lechner BD; Scholtysek P; Bacia K; Blume A; Kressler J; Binder WH
ACS Nano; 2012 Oct; 6(10):8713-27. PubMed ID: 22950802
[TBL] [Abstract][Full Text] [Related]
9. Conformational Dynamics of Mechanically Compliant DNA Nanostructures from Coarse-Grained Molecular Dynamics Simulations.
Shi Z; Castro CE; Arya G
ACS Nano; 2017 May; 11(5):4617-4630. PubMed ID: 28423273
[TBL] [Abstract][Full Text] [Related]
10. Controlled arrangement of nanoparticle arrays in block-copolymer domains.
Haryono A; Binder WH
Small; 2006 May; 2(5):600-11. PubMed ID: 17193094
[TBL] [Abstract][Full Text] [Related]
11. Solvated protein-DNA docking using HADDOCK.
van Dijk M; Visscher KM; Kastritis PL; Bonvin AM
J Biomol NMR; 2013 May; 56(1):51-63. PubMed ID: 23625455
[TBL] [Abstract][Full Text] [Related]
12. DNA Block Macromolecules Based on Rolling Circle Amplification Act as Scaffolds to Build Large-Scale Origami Nanostructures.
Zhang Z; Zhang H; Wang F; Zhang G; Zhou T; Wang X; Liu S; Liu T
Macromol Rapid Commun; 2018 Aug; 39(15):e1800263. PubMed ID: 29952041
[TBL] [Abstract][Full Text] [Related]
13. Nanoconstructions based on double-stranded nucleic acids.
Yevdokimov YM; Skuridin SG; Nechipurenko YD; Zakharov MA; Salyanov VI; Kurnosov AA; Kuznetsov VD; Nikiforov VN
Int J Biol Macromol; 2005 Jul; 36(1-2):103-15. PubMed ID: 15979700
[TBL] [Abstract][Full Text] [Related]
14. The SIRAH force field: A suite for simulations of complex biological systems at the coarse-grained and multiscale levels.
Klein F; Soñora M; Helene Santos L; Nazareno Frigini E; Ballesteros-Casallas A; Rodrigo Machado M; Pantano S
J Struct Biol; 2023 Sep; 215(3):107985. PubMed ID: 37331570
[TBL] [Abstract][Full Text] [Related]
15. Rational design of biomimetic molecularly imprinted materials: theoretical and computational strategies for guiding nanoscale structured polymer development.
Nicholls IA; Andersson HS; Golker K; Henschel H; Karlsson BC; Olsson GD; Rosengren AM; Shoravi S; Suriyanarayanan S; Wiklander JG; Wikman S
Anal Bioanal Chem; 2011 Jun; 400(6):1771-86. PubMed ID: 21475943
[TBL] [Abstract][Full Text] [Related]
16. An Efficient Low Storage and Memory Treatment of Gridded Interaction Fields for Simulations of Macromolecular Association.
Ozboyaci M; Martinez M; Wade RC
J Chem Theory Comput; 2016 Sep; 12(9):4563-77. PubMed ID: 27463233
[TBL] [Abstract][Full Text] [Related]
17. Combination of the CHARMM27 force field with united-atom lipid force fields.
Sapay N; Tieleman DP
J Comput Chem; 2011 May; 32(7):1400-10. PubMed ID: 21425293
[TBL] [Abstract][Full Text] [Related]
18. Understanding structural and molecular properties of complexes of nucleobases and Au13 golden nanocluster by DFT calculations and DFT-MD simulation.
Hashemkhani Shahnazari G; Darvish Ganji M
Sci Rep; 2021 Jan; 11(1):435. PubMed ID: 33432001
[TBL] [Abstract][Full Text] [Related]
19. Generic nanomaterial positioning by carrier and stationary phase design.
Yerushalmi R; Ho JC; Jacobson ZA; Javey A
Nano Lett; 2007 Sep; 7(9):2764-8. PubMed ID: 17661524
[TBL] [Abstract][Full Text] [Related]
20. Conformation transformation determined by different self-assembled phases in a DNA complex with cationic polyhedral oligomeric silsesquioxane lipid.
Cui L; Chen D; Zhu L
ACS Nano; 2008 May; 2(5):921-7. PubMed ID: 19206489
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
