BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

747 related articles for article (PubMed ID: 35027729)

  • 1. Cell2location maps fine-grained cell types in spatial transcriptomics.
    Kleshchevnikov V; Shmatko A; Dann E; Aivazidis A; King HW; Li T; Elmentaite R; Lomakin A; Kedlian V; Gayoso A; Jain MS; Park JS; Ramona L; Tuck E; Arutyunyan A; Vento-Tormo R; Gerstung M; James L; Stegle O; Bayraktar OA
    Nat Biotechnol; 2022 May; 40(5):661-671. PubMed ID: 35027729
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Spatial transcriptomics at subspot resolution with BayesSpace.
    Zhao E; Stone MR; Ren X; Guenthoer J; Smythe KS; Pulliam T; Williams SR; Uytingco CR; Taylor SEB; Nghiem P; Bielas JH; Gottardo R
    Nat Biotechnol; 2021 Nov; 39(11):1375-1384. PubMed ID: 34083791
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Spatially informed clustering, integration, and deconvolution of spatial transcriptomics with GraphST.
    Long Y; Ang KS; Li M; Chong KLK; Sethi R; Zhong C; Xu H; Ong Z; Sachaphibulkij K; Chen A; Zeng L; Fu H; Wu M; Lim LHK; Liu L; Chen J
    Nat Commun; 2023 Mar; 14(1):1155. PubMed ID: 36859400
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Deciphering the Spatial Modular Patterns of Tissues by Integrating Spatial and Single-Cell Transcriptomic Data.
    Shan X; Chen J; Dong K; Zhou W; Zhang S
    J Comput Biol; 2022 Jul; 29(7):650-663. PubMed ID: 35727094
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Integration of spatial and single-cell transcriptomic data elucidates mouse organogenesis.
    Lohoff T; Ghazanfar S; Missarova A; Koulena N; Pierson N; Griffiths JA; Bardot ES; Eng CL; Tyser RCV; Argelaguet R; Guibentif C; Srinivas S; Briscoe J; Simons BD; Hadjantonakis AK; Göttgens B; Reik W; Nichols J; Cai L; Marioni JC
    Nat Biotechnol; 2022 Jan; 40(1):74-85. PubMed ID: 34489600
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Spatial charting of single-cell transcriptomes in tissues.
    Wei R; He S; Bai S; Sei E; Hu M; Thompson A; Chen K; Krishnamurthy S; Navin NE
    Nat Biotechnol; 2022 Aug; 40(8):1190-1199. PubMed ID: 35314812
    [TBL] [Abstract][Full Text] [Related]  

  • 7. STRIDE: accurately decomposing and integrating spatial transcriptomics using single-cell RNA sequencing.
    Sun D; Liu Z; Li T; Wu Q; Wang C
    Nucleic Acids Res; 2022 Apr; 50(7):e42. PubMed ID: 35253896
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Spatial-ID: a cell typing method for spatially resolved transcriptomics via transfer learning and spatial embedding.
    Shen R; Liu L; Wu Z; Zhang Y; Yuan Z; Guo J; Yang F; Zhang C; Chen B; Feng W; Liu C; Guo J; Fan G; Zhang Y; Li Y; Xu X; Yao J
    Nat Commun; 2022 Dec; 13(1):7640. PubMed ID: 36496406
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Joint Bayesian estimation of cell dependence and gene associations in spatially resolved transcriptomic data.
    Chakrabarti A; Ni Y; Mallick BK
    Sci Rep; 2024 Apr; 14(1):9516. PubMed ID: 38664448
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Cell type identification in spatial transcriptomics data can be improved by leveraging cell-type-informative paired tissue images using a Bayesian probabilistic model.
    Zubair A; Chapple RH; Natarajan S; Wright WC; Pan M; Lee HM; Tillman H; Easton J; Geeleher P
    Nucleic Acids Res; 2022 Aug; 50(14):e80. PubMed ID: 35536287
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Knowledge-graph-based cell-cell communication inference for spatially resolved transcriptomic data with SpaTalk.
    Shao X; Li C; Yang H; Lu X; Liao J; Qian J; Wang K; Cheng J; Yang P; Chen H; Xu X; Fan X
    Nat Commun; 2022 Jul; 13(1):4429. PubMed ID: 35908020
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Characterizing spatial gene expression heterogeneity in spatially resolved single-cell transcriptomic data with nonuniform cellular densities.
    Miller BF; Bambah-Mukku D; Dulac C; Zhuang X; Fan J
    Genome Res; 2021 Oct; 31(10):1843-1855. PubMed ID: 34035045
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Cell-type modeling in spatial transcriptomics data elucidates spatially variable colocalization and communication between cell-types in mouse brain.
    Grisanti Canozo FJ; Zuo Z; Martin JF; Samee MAH
    Cell Syst; 2022 Jan; 13(1):58-70.e5. PubMed ID: 34626538
    [TBL] [Abstract][Full Text] [Related]  

  • 14. A comprehensive benchmarking with practical guidelines for cellular deconvolution of spatial transcriptomics.
    Li H; Zhou J; Li Z; Chen S; Liao X; Zhang B; Zhang R; Wang Y; Sun S; Gao X
    Nat Commun; 2023 Mar; 14(1):1548. PubMed ID: 36941264
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Technical optimization of spatially resolved single-cell transcriptomic datasets to study clinical liver disease.
    Rocque B; Guion K; Singh P; Bangerth S; Pickard L; Bhattacharjee J; Eguizabal S; Weaver C; Chopra S; Zhou S; Kohli R; Sher L; Akbari O; Ekser B; Emamaullee JA
    Sci Rep; 2024 Feb; 14(1):3612. PubMed ID: 38351241
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Uncovering an Organ's Molecular Architecture at Single-Cell Resolution by Spatially Resolved Transcriptomics.
    Liao J; Lu X; Shao X; Zhu L; Fan X
    Trends Biotechnol; 2021 Jan; 39(1):43-58. PubMed ID: 32505359
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BASS: multi-scale and multi-sample analysis enables accurate cell type clustering and spatial domain detection in spatial transcriptomic studies.
    Li Z; Zhou X
    Genome Biol; 2022 Aug; 23(1):168. PubMed ID: 35927760
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Belayer: Modeling discrete and continuous spatial variation in gene expression from spatially resolved transcriptomics.
    Ma C; Chitra U; Zhang S; Raphael BJ
    Cell Syst; 2022 Oct; 13(10):786-797.e13. PubMed ID: 36265465
    [TBL] [Abstract][Full Text] [Related]  

  • 19. DestVI identifies continuums of cell types in spatial transcriptomics data.
    Lopez R; Li B; Keren-Shaul H; Boyeau P; Kedmi M; Pilzer D; Jelinski A; Yofe I; David E; Wagner A; Ergen C; Addadi Y; Golani O; Ronchese F; Jordan MI; Amit I; Yosef N
    Nat Biotechnol; 2022 Sep; 40(9):1360-1369. PubMed ID: 35449415
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Spatially aware dimension reduction for spatial transcriptomics.
    Shang L; Zhou X
    Nat Commun; 2022 Nov; 13(1):7203. PubMed ID: 36418351
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 38.