144 related articles for article (PubMed ID: 35030084)
1. TANGO: A GO-Term Embedding Based Method for Protein Semantic Similarity Prediction.
Wang H; Zheng H; Chen DZ
IEEE/ACM Trans Comput Biol Bioinform; 2023; 20(1):694-706. PubMed ID: 35030084
[TBL] [Abstract][Full Text] [Related]
2. GO2Vec: transforming GO terms and proteins to vector representations via graph embeddings.
Zhong X; Kaalia R; Rajapakse JC
BMC Genomics; 2019 Dec; 20(Suppl 9):918. PubMed ID: 31874639
[TBL] [Abstract][Full Text] [Related]
3. Anc2vec: embedding gene ontology terms by preserving ancestors relationships.
Edera AA; Milone DH; Stegmayer G
Brief Bioinform; 2022 Mar; 23(2):. PubMed ID: 35136916
[TBL] [Abstract][Full Text] [Related]
4. Measure the Semantic Similarity of GO Terms Using Aggregate Information Content.
Song X; Li L; Srimani PK; Yu PS; Wang JZ
IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(3):468-76. PubMed ID: 26356015
[TBL] [Abstract][Full Text] [Related]
5. Graph embeddings on gene ontology annotations for protein-protein interaction prediction.
Zhong X; Rajapakse JC
BMC Bioinformatics; 2020 Dec; 21(Suppl 16):560. PubMed ID: 33323115
[TBL] [Abstract][Full Text] [Related]
6. Learning representations for gene ontology terms by jointly encoding graph structure and textual node descriptors.
Zhao L; Sun H; Cao X; Wen N; Wang J; Wang C
Brief Bioinform; 2022 Sep; 23(5):. PubMed ID: 35901452
[TBL] [Abstract][Full Text] [Related]
7. Interspecies gene function prediction using semantic similarity.
Yu G; Luo W; Fu G; Wang J
BMC Syst Biol; 2016 Dec; 10(Suppl 4):121. PubMed ID: 28155711
[TBL] [Abstract][Full Text] [Related]
8. Use of word and graph embedding to measure semantic relatedness between Unified Medical Language System concepts.
Mao Y; Fung KW
J Am Med Inform Assoc; 2020 Oct; 27(10):1538-1546. PubMed ID: 33029614
[TBL] [Abstract][Full Text] [Related]
9. COS: A new MeSH term embedding incorporating corpus, ontology, and semantic predications.
Ding J; Jin W
PLoS One; 2021; 16(5):e0251094. PubMed ID: 33945566
[TBL] [Abstract][Full Text] [Related]
10. Protein Function Prediction With Functional and Topological Knowledge of Gene Ontology.
Zhao Y; Yang Z; Hong Y; Yang Y; Wang L; Zhang Y; Lin H; Wang J
IEEE Trans Nanobioscience; 2023 Oct; 22(4):755-762. PubMed ID: 37204950
[TBL] [Abstract][Full Text] [Related]
11. IntelliGO: a new vector-based semantic similarity measure including annotation origin.
Benabderrahmane S; Smail-Tabbone M; Poch O; Napoli A; Devignes MD
BMC Bioinformatics; 2010 Dec; 11():588. PubMed ID: 21122125
[TBL] [Abstract][Full Text] [Related]
12. Assessment of Semantic Similarity between Proteins Using Information Content and Topological Properties of the Gene Ontology Graph.
Dutta P; Basu S; Kundu M
IEEE/ACM Trans Comput Biol Bioinform; 2018; 15(3):839-849. PubMed ID: 28371781
[TBL] [Abstract][Full Text] [Related]
13. A relation based measure of semantic similarity for Gene Ontology annotations.
Sheehan B; Quigley A; Gaudin B; Dobson S
BMC Bioinformatics; 2008 Nov; 9():468. PubMed ID: 18983678
[TBL] [Abstract][Full Text] [Related]
14. HiG2Vec: hierarchical representations of Gene Ontology and genes in the Poincaré ball.
Kim J; Kim D; Sohn KA
Bioinformatics; 2021 Sep; 37(18):2971-2980. PubMed ID: 33760022
[TBL] [Abstract][Full Text] [Related]
15. protein2vec: Predicting Protein-Protein Interactions Based on LSTM.
Zhang J; Zhu M; Qian Y
IEEE/ACM Trans Comput Biol Bioinform; 2022; 19(3):1257-1266. PubMed ID: 32750870
[TBL] [Abstract][Full Text] [Related]
16. Predicting functions of maize proteins using graph convolutional network.
Zhou G; Wang J; Zhang X; Guo M; Yu G
BMC Bioinformatics; 2020 Dec; 21(Suppl 16):420. PubMed ID: 33323113
[TBL] [Abstract][Full Text] [Related]
17. An improved method for scoring protein-protein interactions using semantic similarity within the gene ontology.
Jain S; Bader GD
BMC Bioinformatics; 2010 Nov; 11():562. PubMed ID: 21078182
[TBL] [Abstract][Full Text] [Related]
18. Partial order relation-based gene ontology embedding improves protein function prediction.
Li W; Wang B; Dai J; Kou Y; Chen X; Pan Y; Hu S; Xu ZZ
Brief Bioinform; 2024 Jan; 25(2):. PubMed ID: 38446740
[TBL] [Abstract][Full Text] [Related]
19. Improving automatic GO annotation with semantic similarity.
Sarker B; Khare N; Devignes MD; Aridhi S
BMC Bioinformatics; 2022 Dec; 23(Suppl 2):433. PubMed ID: 36510133
[TBL] [Abstract][Full Text] [Related]
20. TopoICSim: a new semantic similarity measure based on gene ontology.
Ehsani R; Drabløs F
BMC Bioinformatics; 2016 Jul; 17(1):296. PubMed ID: 27473391
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
