These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

144 related articles for article (PubMed ID: 35041494)

  • 1. Deriving Ranges of Optimal Estimated Transcript Expression due to Nonidentifiability.
    Zheng H; Ma C; Kingsford C
    J Comput Biol; 2022 Feb; 29(2):121-139. PubMed ID: 35041494
    [TBL] [Abstract][Full Text] [Related]  

  • 2. BaRTv1.0: an improved barley reference transcript dataset to determine accurate changes in the barley transcriptome using RNA-seq.
    Rapazote-Flores P; Bayer M; Milne L; Mayer CD; Fuller J; Guo W; Hedley PE; Morris J; Halpin C; Kam J; McKim SM; Zwirek M; Casao MC; Barakate A; Schreiber M; Stephen G; Zhang R; Brown JWS; Waugh R; Simpson CG
    BMC Genomics; 2019 Dec; 20(1):968. PubMed ID: 31829136
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RSEM: accurate transcript quantification from RNA-Seq data with or without a reference genome.
    Li B; Dewey CN
    BMC Bioinformatics; 2011 Aug; 12():323. PubMed ID: 21816040
    [TBL] [Abstract][Full Text] [Related]  

  • 4. AtRTD - a comprehensive reference transcript dataset resource for accurate quantification of transcript-specific expression in Arabidopsis thaliana.
    Zhang R; Calixto CP; Tzioutziou NA; James AB; Simpson CG; Guo W; Marquez Y; Kalyna M; Patro R; Eyras E; Barta A; Nimmo HG; Brown JW
    New Phytol; 2015 Oct; 208(1):96-101. PubMed ID: 26111100
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A robust method for transcript quantification with RNA-seq data.
    Huang Y; Hu Y; Jones CD; MacLeod JN; Chiang DY; Liu Y; Prins JF; Liu J
    J Comput Biol; 2013 Mar; 20(3):167-87. PubMed ID: 23461570
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Detecting, Categorizing, and Correcting Coverage Anomalies of RNA-Seq Quantification.
    Ma C; Kingsford C
    Cell Syst; 2019 Dec; 9(6):589-599.e7. PubMed ID: 31786209
    [TBL] [Abstract][Full Text] [Related]  

  • 7. ESPRESSO: Robust discovery and quantification of transcript isoforms from error-prone long-read RNA-seq data.
    Gao Y; Wang F; Wang R; Kutschera E; Xu Y; Xie S; Wang Y; Kadash-Edmondson KE; Lin L; Xing Y
    Sci Adv; 2023 Jan; 9(3):eabq5072. PubMed ID: 36662851
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Event Analysis: Using Transcript Events To Improve Estimates of Abundance in RNA-seq Data.
    Newman JRB; Concannon P; Tardaguila M; Conesa A; McIntyre LM
    G3 (Bethesda); 2018 Aug; 8(9):2923-2940. PubMed ID: 30021829
    [TBL] [Abstract][Full Text] [Related]  

  • 9. TIGAR: transcript isoform abundance estimation method with gapped alignment of RNA-Seq data by variational Bayesian inference.
    Nariai N; Hirose O; Kojima K; Nagasaki M
    Bioinformatics; 2013 Sep; 29(18):2292-9. PubMed ID: 23821651
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Exact transcript quantification over splice graphs.
    Ma C; Zheng H; Kingsford C
    Algorithms Mol Biol; 2021 May; 16(1):5. PubMed ID: 33971903
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A fast and globally optimal solution for RNA-seq quantification.
    Yi H; Lin Y; Chang Q; Jin W
    Brief Bioinform; 2023 Sep; 24(5):. PubMed ID: 37595963
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Design of RNA splicing analysis null models for post hoc filtering of Drosophila head RNA-Seq data with the splicing analysis kit (Spanki).
    Sturgill D; Malone JH; Sun X; Smith HE; Rabinow L; Samson ML; Oliver B
    BMC Bioinformatics; 2013 Nov; 14():320. PubMed ID: 24209455
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A survey of the complex transcriptome from the highly polyploid sugarcane genome using full-length isoform sequencing and de novo assembly from short read sequencing.
    Hoang NV; Furtado A; Mason PJ; Marquardt A; Kasirajan L; Thirugnanasambandam PP; Botha FC; Henry RJ
    BMC Genomics; 2017 May; 18(1):395. PubMed ID: 28532419
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Zea mays RNA-seq estimated transcript abundances are strongly affected by read mapping bias.
    Zhan S; Griswold C; Lukens L
    BMC Genomics; 2021 Apr; 22(1):285. PubMed ID: 33874908
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Reference genome and transcriptome informed by the sex chromosome complement of the sample increase ability to detect sex differences in gene expression from RNA-Seq data.
    Olney KC; Brotman SM; Andrews JP; Valverde-Vesling VA; Wilson MA
    Biol Sex Differ; 2020 Jul; 11(1):42. PubMed ID: 32693839
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Modeling alternative splicing variants from RNA-Seq data with isoform graphs.
    Beretta S; Bonizzoni P; Vedova GD; Pirola Y; Rizzi R
    J Comput Biol; 2014 Jan; 21(1):16-40. PubMed ID: 24200390
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Network-Based Isoform Quantification with RNA-Seq Data for Cancer Transcriptome Analysis.
    Zhang W; Chang JW; Lin L; Minn K; Wu B; Chien J; Yong J; Zheng H; Kuang R
    PLoS Comput Biol; 2015 Dec; 11(12):e1004465. PubMed ID: 26699225
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Visualization and analysis of RNA-Seq assembly graphs.
    Nazarie FW; Shih B; Angus T; Barnett MW; Chen SH; Summers KM; Klein K; Faulkner GJ; Saini HK; Watson M; Dongen SV; Enright AJ; Freeman TC
    Nucleic Acids Res; 2019 Aug; 47(14):7262-7275. PubMed ID: 31305886
    [TBL] [Abstract][Full Text] [Related]  

  • 19. FDM: a graph-based statistical method to detect differential transcription using RNA-seq data.
    Singh D; Orellana CF; Hu Y; Jones CD; Liu Y; Chiang DY; Liu J; Prins JF
    Bioinformatics; 2011 Oct; 27(19):2633-40. PubMed ID: 21824971
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Terminus enables the discovery of data-driven, robust transcript groups from RNA-seq data.
    Sarkar H; Srivastava A; Bravo HC; Love MI; Patro R
    Bioinformatics; 2020 Jul; 36(Suppl_1):i102-i110. PubMed ID: 32657377
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.