These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
24. Get the most out of your metagenome: computational analysis of environmental sequence data. Raes J; Foerstner KU; Bork P Curr Opin Microbiol; 2007 Oct; 10(5):490-8. PubMed ID: 17936679 [TBL] [Abstract][Full Text] [Related]
26. Bioinformatics approaches for genomics and post genomics applications of next-generation sequencing. Horner DS; Pavesi G; Castrignanò T; De Meo PD; Liuni S; Sammeth M; Picardi E; Pesole G Brief Bioinform; 2010 Mar; 11(2):181-97. PubMed ID: 19864250 [TBL] [Abstract][Full Text] [Related]
27. Producing parasitic helminth reference and draft genomes at the Wellcome Trust Sanger Institute. Holroyd N; Sanchez-Flores A Parasite Immunol; 2012; 34(2-3):100-7. PubMed ID: 21707658 [TBL] [Abstract][Full Text] [Related]
28. Assemblies: the good, the bad, the ugly. Birney E Nat Methods; 2011 Jan; 8(1):59-60. PubMed ID: 21191376 [No Abstract] [Full Text] [Related]
29. AlignGraph: algorithm for secondary de novo genome assembly guided by closely related references. Bao E; Jiang T; Girke T Bioinformatics; 2014 Jun; 30(12):i319-i328. PubMed ID: 24932000 [TBL] [Abstract][Full Text] [Related]
33. ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter. Jackman SD; Vandervalk BP; Mohamadi H; Chu J; Yeo S; Hammond SA; Jahesh G; Khan H; Coombe L; Warren RL; Birol I Genome Res; 2017 May; 27(5):768-777. PubMed ID: 28232478 [TBL] [Abstract][Full Text] [Related]
34. Assembly of Ancient Mitochondrial Genomes Without a Closely Related Reference Sequence. Hahn C Methods Mol Biol; 2019; 1963():195-213. PubMed ID: 30875055 [TBL] [Abstract][Full Text] [Related]
35. An investigation of causes of false positive single nucleotide polymorphisms using simulated reads from a small eukaryote genome. Ribeiro A; Golicz A; Hackett CA; Milne I; Stephen G; Marshall D; Flavell AJ; Bayer M BMC Bioinformatics; 2015 Nov; 16():382. PubMed ID: 26558718 [TBL] [Abstract][Full Text] [Related]
36. Ragout-a reference-assisted assembly tool for bacterial genomes. Kolmogorov M; Raney B; Paten B; Pham S Bioinformatics; 2014 Jun; 30(12):i302-9. PubMed ID: 24931998 [TBL] [Abstract][Full Text] [Related]
37. A beginner's guide to eukaryotic genome annotation. Yandell M; Ence D Nat Rev Genet; 2012 Apr; 13(5):329-42. PubMed ID: 22510764 [TBL] [Abstract][Full Text] [Related]
38. Proposed minimal standards for the use of genome data for the taxonomy of prokaryotes. Chun J; Oren A; Ventosa A; Christensen H; Arahal DR; da Costa MS; Rooney AP; Yi H; Xu XW; De Meyer S; Trujillo ME Int J Syst Evol Microbiol; 2018 Jan; 68(1):461-466. PubMed ID: 29292687 [TBL] [Abstract][Full Text] [Related]