These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

175 related articles for article (PubMed ID: 35058350)

  • 1. VfoldMCPX: predicting multistrand RNA complexes.
    Zhang S; Cheng Y; Guo P; Chen SJ
    RNA; 2022 Apr; 28(4):596-608. PubMed ID: 35058350
    [TBL] [Abstract][Full Text] [Related]  

  • 2. VfoldCPX Server: Predicting RNA-RNA Complex Structure and Stability.
    Xu X; Chen SJ
    PLoS One; 2016; 11(9):e0163454. PubMed ID: 27657918
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Vfold: a web server for RNA structure and folding thermodynamics prediction.
    Xu X; Zhao P; Chen SJ
    PLoS One; 2014; 9(9):e107504. PubMed ID: 25215508
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A fast and robust iterative algorithm for prediction of RNA pseudoknotted secondary structures.
    Jabbari H; Condon A
    BMC Bioinformatics; 2014 May; 15():147. PubMed ID: 24884954
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Multistrand RNA secondary structure prediction and nanostructure design including pseudoknots.
    Bindewald E; Afonin K; Jaeger L; Shapiro BA
    ACS Nano; 2011 Dec; 5(12):9542-51. PubMed ID: 22067111
    [TBL] [Abstract][Full Text] [Related]  

  • 6. MCTBI: a web server for predicting metal ion effects in RNA structures.
    Sun LZ; Zhang JX; Chen SJ
    RNA; 2017 Aug; 23(8):1155-1165. PubMed ID: 28450533
    [TBL] [Abstract][Full Text] [Related]  

  • 7. IPknot: fast and accurate prediction of RNA secondary structures with pseudoknots using integer programming.
    Sato K; Kato Y; Hamada M; Akutsu T; Asai K
    Bioinformatics; 2011 Jul; 27(13):i85-93. PubMed ID: 21685106
    [TBL] [Abstract][Full Text] [Related]  

  • 8. DotKnot: pseudoknot prediction using the probability dot plot under a refined energy model.
    Sperschneider J; Datta A
    Nucleic Acids Res; 2010 Apr; 38(7):e103. PubMed ID: 20123730
    [TBL] [Abstract][Full Text] [Related]  

  • 9. cRNAsp12 Web Server for the Prediction of Circular RNA Secondary Structures and Stabilities.
    Wang F; Li W; Li B; Xie L; Tong Y; Xu X
    Int J Mol Sci; 2023 Feb; 24(4):. PubMed ID: 36835231
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Thermodynamics of RNA structures by Wang-Landau sampling.
    Lou F; Clote P
    Bioinformatics; 2010 Jun; 26(12):i278-86. PubMed ID: 20529917
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Heuristic RNA pseudoknot prediction including intramolecular kissing hairpins.
    Sperschneider J; Datta A; Wise MJ
    RNA; 2011 Jan; 17(1):27-38. PubMed ID: 21098139
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Secondary structure prediction of interacting RNA molecules.
    Andronescu M; Zhang ZC; Condon A
    J Mol Biol; 2005 Feb; 345(5):987-1001. PubMed ID: 15644199
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Pseudoknots in RNA folding landscapes.
    Kucharík M; Hofacker IL; Stadler PF; Qin J
    Bioinformatics; 2016 Jan; 32(2):187-94. PubMed ID: 26428288
    [TBL] [Abstract][Full Text] [Related]  

  • 14. TBI server: a web server for predicting ion effects in RNA folding.
    Zhu Y; He Z; Chen SJ
    PLoS One; 2015; 10(3):e0119705. PubMed ID: 25798933
    [TBL] [Abstract][Full Text] [Related]  

  • 15. RNA secondary structure prediction with pseudoknots: Contribution of algorithm versus energy model.
    Jabbari H; Wark I; Montemagno C
    PLoS One; 2018; 13(4):e0194583. PubMed ID: 29621250
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Design, implementation and evaluation of a practical pseudoknot folding algorithm based on thermodynamics.
    Reeder J; Giegerich R
    BMC Bioinformatics; 2004 Aug; 5():104. PubMed ID: 15294028
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A dynamic programming algorithm for RNA structure prediction including pseudoknots.
    Rivas E; Eddy SR
    J Mol Biol; 1999 Feb; 285(5):2053-68. PubMed ID: 9925784
    [TBL] [Abstract][Full Text] [Related]  

  • 18. An iterated loop matching approach to the prediction of RNA secondary structures with pseudoknots.
    Ruan J; Stormo GD; Zhang W
    Bioinformatics; 2004 Jan; 20(1):58-66. PubMed ID: 14693809
    [TBL] [Abstract][Full Text] [Related]  

  • 19. KnotSeeker: heuristic pseudoknot detection in long RNA sequences.
    Sperschneider J; Datta A
    RNA; 2008 Apr; 14(4):630-40. PubMed ID: 18314500
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Prediction of geometrically feasible three-dimensional structures of pseudoknotted RNA through free energy estimation.
    Zhang J; Dundas J; Lin M; Chen R; Wang W; Liang J
    RNA; 2009 Dec; 15(12):2248-63. PubMed ID: 19864433
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.