281 related articles for article (PubMed ID: 35069263)
21. Inferring spatial transcriptomics markers from whole slide images to characterize metastasis-related spatial heterogeneity of colorectal tumors: A pilot study.
Fatemi M; Feng E; Sharma C; Azher Z; Goel T; Ramwala O; Palisoul SM; Barney RE; Perreard L; Kolling FW; Salas LA; Christensen BC; Tsongalis GJ; Vaickus LJ; Levy JJ
J Pathol Inform; 2023; 14():100308. PubMed ID: 37114077
[TBL] [Abstract][Full Text] [Related]
22. Recent advances in spatially variable gene detection in spatial transcriptomics.
Das Adhikari S; Yang J; Wang J; Cui Y
Comput Struct Biotechnol J; 2024 Dec; 23():883-891. PubMed ID: 38370977
[TBL] [Abstract][Full Text] [Related]
23. Single-cell level deconvolution, convolution, and clustering in spatial transcriptomics by aligning spot level transcriptome to nuclear morphology.
Zhu S; Kubota N; Wang S; Wang T; Xiao G; Hoshida Y
bioRxiv; 2023 Dec; ():. PubMed ID: 38187541
[TBL] [Abstract][Full Text] [Related]
24. Spatial transcriptomics in health and disease.
Jain S; Eadon MT
Nat Rev Nephrol; 2024 May; ():. PubMed ID: 38719971
[TBL] [Abstract][Full Text] [Related]
25. SPASCER: spatial transcriptomics annotation at single-cell resolution.
Fan Z; Luo Y; Lu H; Wang T; Feng Y; Zhao W; Kim P; Zhou X
Nucleic Acids Res; 2023 Jan; 51(D1):D1138-D1149. PubMed ID: 36243975
[TBL] [Abstract][Full Text] [Related]
26. The Overlooked Role of Specimen Preparation in Bolstering Deep Learning-Enhanced Spatial Transcriptomics Workflows.
Fatemi MY; Lu Y; Diallo AB; Srinivasan G; Azher ZL; Christensen BC; Salas LA; Tsongalis GJ; Palisoul SM; Perreard L; Kolling FW; Vaickus LJ; Levy JJ
medRxiv; 2023 Oct; ():. PubMed ID: 37873287
[TBL] [Abstract][Full Text] [Related]
27. Dissecting mammalian reproduction with spatial transcriptomics.
Zhang X; Cao Q; Rajachandran S; Grow EJ; Evans M; Chen H
Hum Reprod Update; 2023 Nov; 29(6):794-810. PubMed ID: 37353907
[TBL] [Abstract][Full Text] [Related]
28. A guidebook of spatial transcriptomic technologies, data resources and analysis approaches.
Yue L; Liu F; Hu J; Yang P; Wang Y; Dong J; Shu W; Huang X; Wang S
Comput Struct Biotechnol J; 2023; 21():940-955. PubMed ID: 38213887
[TBL] [Abstract][Full Text] [Related]
29. A SELECTIVE REVIEW OF RECENT DEVELOPMENTS IN SPATIALLY VARIABLE GENE DETECTION FOR SPATIAL TRANSCRIPTOMICS.
Adhikari SD; Yang J; Wang J; Cui Y
ArXiv; 2023 Nov; ():. PubMed ID: 38045476
[TBL] [Abstract][Full Text] [Related]
30. Deciphering tissue heterogeneity from spatially resolved transcriptomics by the autoencoder-assisted graph convolutional neural network.
Li X; Huang W; Xu X; Zhang HY; Shi Q
Front Genet; 2023; 14():1202409. PubMed ID: 37303949
[TBL] [Abstract][Full Text] [Related]
31. Seq-Scope Protocol: Repurposing Illumina Sequencing Flow Cells for High-Resolution Spatial Transcriptomics.
Kim Y; Cheng W; Cho CS; Hwang Y; Si Y; Park A; Schrank M; Hsu JE; Xi J; Kim M; Pedersen E; Koues OI; Wilson T; Jun G; Kang HM; Lee JH
bioRxiv; 2024 Apr; ():. PubMed ID: 38617262
[TBL] [Abstract][Full Text] [Related]
32. CellsFromSpace: a fast, accurate, and reference-free tool to deconvolve and annotate spatially distributed omics data.
Thuilliez C; Moquin-Beaudry G; Khneisser P; Marques Da Costa ME; Karkar S; Boudhouche H; Drubay D; Audinot B; Geoerger B; Scoazec JY; Gaspar N; Marchais A
Bioinform Adv; 2024; 4(1):vbae081. PubMed ID: 38915885
[TBL] [Abstract][Full Text] [Related]
33. Exploring tissue architecture using spatial transcriptomics.
Rao A; Barkley D; França GS; Yanai I
Nature; 2021 Aug; 596(7871):211-220. PubMed ID: 34381231
[TBL] [Abstract][Full Text] [Related]
34. Feasibility of Inferring Spatial Transcriptomics from Single-Cell Histological Patterns for Studying Colon Cancer Tumor Heterogeneity.
Fatemi MY; Lu Y; Sharma C; Feng E; Azher ZL; Diallo AB; Srinivasan G; Rosner GM; Pointer KB; Christensen BC; Salas LA; Tsongalis GJ; Palisoul SM; Perreard L; Kolling FW; Vaickus LJ; Levy JJ
medRxiv; 2023 Oct; ():. PubMed ID: 37873186
[TBL] [Abstract][Full Text] [Related]
35. Spatially resolved transcriptomics and the kidney: many opportunities.
Dixon EE; Wu H; Sulvarán-Guel E; Guo J; Humphreys BD
Kidney Int; 2022 Sep; 102(3):482-491. PubMed ID: 35788360
[TBL] [Abstract][Full Text] [Related]
36. stAPAminer: Mining Spatial Patterns of Alternative Polyadenylation for Spatially Resolved Transcriptomic Studies.
Ji G; Tang Q; Zhu S; Zhu J; Ye P; Xia S; Wu X
Genomics Proteomics Bioinformatics; 2023 Jun; 21(3):601-618. PubMed ID: 36669641
[TBL] [Abstract][Full Text] [Related]
37. Cell type identification in spatial transcriptomics data can be improved by leveraging cell-type-informative paired tissue images using a Bayesian probabilistic model.
Zubair A; Chapple RH; Natarajan S; Wright WC; Pan M; Lee HM; Tillman H; Easton J; Geeleher P
Nucleic Acids Res; 2022 Aug; 50(14):e80. PubMed ID: 35536287
[TBL] [Abstract][Full Text] [Related]
38. Dimension-agnostic and granularity-based spatially variable gene identification.
Wang J; Li J; Kramer ST; Su L; Chang Y; Xu C; Ma Q; Xu D
bioRxiv; 2023 Mar; ():. PubMed ID: 36993544
[TBL] [Abstract][Full Text] [Related]
39. Dimension-agnostic and granularity-based spatially variable gene identification.
Wang J; Li J; Kramer S; Su L; Chang Y; Xu C; Ma Q; Xu D
Res Sq; 2023 Mar; ():. PubMed ID: 36993309
[TBL] [Abstract][Full Text] [Related]
40. Integrating multi-modal information to detect spatial domains of spatial transcriptomics by graph attention network.
Huo Y; Guo Y; Wang J; Xue H; Feng Y; Chen W; Li X
J Genet Genomics; 2023 Sep; 50(9):720-733. PubMed ID: 37356752
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
