These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
194 related articles for article (PubMed ID: 35089918)
41. Simplified geometric representations of protein structures identify complementary interaction interfaces. McCafferty CL; Marcotte EM; Taylor DW Proteins; 2021 Mar; 89(3):348-360. PubMed ID: 33140424 [TBL] [Abstract][Full Text] [Related]
42. Energy-based graph convolutional networks for scoring protein docking models. Cao Y; Shen Y Proteins; 2020 Aug; 88(8):1091-1099. PubMed ID: 32144844 [TBL] [Abstract][Full Text] [Related]
43. Defining the limits of homology modeling in information-driven protein docking. Rodrigues JP; Melquiond AS; Karaca E; Trellet M; van Dijk M; van Zundert GC; Schmitz C; de Vries SJ; Bordogna A; Bonati L; Kastritis PL; Bonvin AM Proteins; 2013 Dec; 81(12):2119-28. PubMed ID: 23913867 [TBL] [Abstract][Full Text] [Related]
44. Monte Carlo replica-exchange based ensemble docking of protein conformations. Zhang Z; Ehmann U; Zacharias M Proteins; 2017 May; 85(5):924-937. PubMed ID: 28168752 [TBL] [Abstract][Full Text] [Related]
45. Protein-protein interactions in a crowded environment: an analysis via cross-docking simulations and evolutionary information. Lopes A; Sacquin-Mora S; Dimitrova V; Laine E; Ponty Y; Carbone A PLoS Comput Biol; 2013; 9(12):e1003369. PubMed ID: 24339765 [TBL] [Abstract][Full Text] [Related]
46. Protein-protein docking with binding site patch prediction and network-based terms enhanced combinatorial scoring. Gong X; Wang P; Yang F; Chang S; Liu B; He H; Cao L; Xu X; Li C; Chen W; Wang C Proteins; 2010 Nov; 78(15):3150-5. PubMed ID: 20806233 [TBL] [Abstract][Full Text] [Related]
47. Residue conservation information for generating near-native structures in protein-protein docking. Duan Y; Reddy BV; Kaznessis YN J Bioinform Comput Biol; 2006 Aug; 4(4):793-806. PubMed ID: 17007068 [TBL] [Abstract][Full Text] [Related]
48. Examination of shape complementarity in docking of unbound proteins. Norel R; Petrey D; Wolfson HJ; Nussinov R Proteins; 1999 Aug; 36(3):307-17. PubMed ID: 10409824 [TBL] [Abstract][Full Text] [Related]
49. On the analysis of protein-protein interactions via knowledge-based potentials for the prediction of protein-protein docking. Feliu E; Aloy P; Oliva B Protein Sci; 2011 Mar; 20(3):529-41. PubMed ID: 21432933 [TBL] [Abstract][Full Text] [Related]
50. Coarse-grained and atomic resolution biomolecular docking with the ATTRACT approach. Glashagen G; de Vries S; Uciechowska-Kaczmarzyk U; Samsonov SA; Murail S; Tuffery P; Zacharias M Proteins; 2020 Aug; 88(8):1018-1028. PubMed ID: 31785163 [TBL] [Abstract][Full Text] [Related]
51. Simulated unbound structures for benchmarking of protein docking in the DOCKGROUND resource. Kirys T; Ruvinsky AM; Singla D; Tuzikov AV; Kundrotas PJ; Vakser IA BMC Bioinformatics; 2015 Jul; 16(1):243. PubMed ID: 26227548 [TBL] [Abstract][Full Text] [Related]
52. Multi-LZerD: multiple protein docking for asymmetric complexes. Esquivel-Rodríguez J; Yang YD; Kihara D Proteins; 2012 Jul; 80(7):1818-33. PubMed ID: 22488467 [TBL] [Abstract][Full Text] [Related]
53. Protein Interaction Energy Landscapes are Shaped by Functional and also Non-functional Partners. Schweke H; Mucchielli MH; Sacquin-Mora S; Bei W; Lopes A J Mol Biol; 2020 Feb; 432(4):1183-1198. PubMed ID: 31931010 [TBL] [Abstract][Full Text] [Related]
54. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility. Schueler-Furman O; Wang C; Baker D Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249 [TBL] [Abstract][Full Text] [Related]
57. Shape complementarity at protein interfaces via global docking optimisation. Williams G J Mol Graph Model; 2018 Sep; 84():69-73. PubMed ID: 29933170 [TBL] [Abstract][Full Text] [Related]
58. Exploring the potential of global protein-protein docking: an overview and critical assessment of current programs for automatic ab initio docking. Huang SY Drug Discov Today; 2015 Aug; 20(8):969-77. PubMed ID: 25801181 [TBL] [Abstract][Full Text] [Related]
59. Peptide Suboptimal Conformation Sampling for the Prediction of Protein-Peptide Interactions. Lamiable A; Thévenet P; Eustache S; Saladin A; Moroy G; Tuffery P Methods Mol Biol; 2017; 1561():21-34. PubMed ID: 28236231 [TBL] [Abstract][Full Text] [Related]
60. Identification of near-native structures by clustering protein docking conformations. Lorenzen S; Zhang Y Proteins; 2007 Jul; 68(1):187-94. PubMed ID: 17397057 [TBL] [Abstract][Full Text] [Related] [Previous] [Next] [New Search]