BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

113 related articles for article (PubMed ID: 35099519)

  • 1. GenomeTornadoPlot: a novel R package for CNV visualization and focality analysis.
    Hong C; Thiele R; Feuerbach L
    Bioinformatics; 2022 Mar; 38(7):2036-2038. PubMed ID: 35099519
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Identification of recurrent focal copy number variations and their putative targeted driver genes in ovarian cancer.
    Zhang L; Yuan Y; Lu KH; Zhang L
    BMC Bioinformatics; 2016 May; 17(1):222. PubMed ID: 27230211
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Revana: a comprehensive tool for regulatory variant analysis and visualization of cancer genomes.
    Ulrich E; Pfister SM; Jäger N
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36576005
    [TBL] [Abstract][Full Text] [Related]  

  • 4. aCNViewer: Comprehensive genome-wide visualization of absolute copy number and copy neutral variations.
    Renault V; Tost J; Pichon F; Wang-Renault SF; Letouzé E; Imbeaud S; Zucman-Rossi J; Deleuze JF; How-Kit A
    PLoS One; 2017; 12(12):e0189334. PubMed ID: 29261730
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Minimum error calibration and normalization for genomic copy number analysis.
    Gao B; Baudis M
    Genomics; 2020 Sep; 112(5):3331-3341. PubMed ID: 32413400
    [TBL] [Abstract][Full Text] [Related]  

  • 6. CNV-ClinViewer: enhancing the clinical interpretation of large copy-number variants online.
    Macnee M; Pérez-Palma E; Brünger T; Klöckner C; Platzer K; Stefanski A; Montanucci L; Bayat A; Radtke M; Collins RL; Talkowski M; Blankenberg D; Møller RS; Lemke JR; Nothnagel M; May P; Lal D
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37104749
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GenomeCAT: a versatile tool for the analysis and integrative visualization of DNA copy number variants.
    Tebel K; Boldt V; Steininger A; Port M; Ebert G; Ullmann R
    BMC Bioinformatics; 2017 Jan; 18(1):19. PubMed ID: 28061750
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Conumee 2.0: enhanced copy-number variation analysis from DNA methylation arrays for humans and mice.
    Daenekas B; Pérez E; Boniolo F; Stefan S; Benfatto S; Sill M; Sturm D; Jones DTW; Capper D; Zapatka M; Hovestadt V
    Bioinformatics; 2024 Feb; 40(2):. PubMed ID: 38244574
    [TBL] [Abstract][Full Text] [Related]  

  • 9. PatternCNV: a versatile tool for detecting copy number changes from exome sequencing data.
    Wang C; Evans JM; Bhagwate AV; Prodduturi N; Sarangi V; Middha M; Sicotte H; Vedell PT; Hart SN; Oliver GR; Kocher JP; Maurer MJ; Novak AJ; Slager SL; Cerhan JR; Asmann YW
    Bioinformatics; 2014 Sep; 30(18):2678-80. PubMed ID: 24876377
    [TBL] [Abstract][Full Text] [Related]  

  • 10. iCopyDAV: Integrated platform for copy number variations-Detection, annotation and visualization.
    Dharanipragada P; Vogeti S; Parekh N
    PLoS One; 2018; 13(4):e0195334. PubMed ID: 29621297
    [TBL] [Abstract][Full Text] [Related]  

  • 11. ReConPlot: an R package for the visualization and interpretation of genomic rearrangements.
    Espejo Valle-Inclán J; Cortés-Ciriano I
    Bioinformatics; 2023 Dec; 39(12):. PubMed ID: 38058190
    [TBL] [Abstract][Full Text] [Related]  

  • 12. modSaRa: a computationally efficient R package for CNV identification.
    Xiao F; Niu Y; Hao N; Xu Y; Jin Z; Zhang H
    Bioinformatics; 2017 Aug; 33(15):2384-2385. PubMed ID: 28453611
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Software comparison for evaluating genomic copy number variation for Affymetrix 6.0 SNP array platform.
    Eckel-Passow JE; Atkinson EJ; Maharjan S; Kardia SL; de Andrade M
    BMC Bioinformatics; 2011 May; 12():220. PubMed ID: 21627824
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Inferring causal genomic alterations in breast cancer using gene expression data.
    Tran LM; Zhang B; Zhang Z; Zhang C; Xie T; Lamb JR; Dai H; Schadt EE; Zhu J
    BMC Syst Biol; 2011 Aug; 5():121. PubMed ID: 21806811
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Arabidopsis thaliana population analysis reveals high plasticity of the genomic region spanning MSH2, AT3G18530 and AT3G18535 genes and provides evidence for NAHR-driven recurrent CNV events occurring in this location.
    Zmienko A; Samelak-Czajka A; Kozlowski P; Szymanska M; Figlerowicz M
    BMC Genomics; 2016 Nov; 17(1):893. PubMed ID: 27825302
    [TBL] [Abstract][Full Text] [Related]  

  • 16. CNVannotator: a comprehensive annotation server for copy number variation in the human genome.
    Zhao M; Zhao Z
    PLoS One; 2013; 8(11):e80170. PubMed ID: 24244640
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Integrating genomic correlation structure improves copy number variations detection.
    Luo X; Qin F; Cai G; Xiao F
    Bioinformatics; 2021 Apr; 37(3):312-317. PubMed ID: 32805016
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Joint detection of copy number variations in parent-offspring trios.
    Liu Y; Liu J; Lu J; Peng J; Juan L; Zhu X; Li B; Wang Y
    Bioinformatics; 2016 Apr; 32(8):1130-7. PubMed ID: 26644415
    [TBL] [Abstract][Full Text] [Related]  

  • 19. svpluscnv: analysis and visualization of complex structural variation data.
    Lopez G; Egolf LE; Giorgi FM; Diskin SJ; Margolin AA
    Bioinformatics; 2021 Jul; 37(13):1912-1914. PubMed ID: 33051644
    [TBL] [Abstract][Full Text] [Related]  

  • 20. ClearCNV: CNV calling from NGS panel data in the presence of ambiguity and noise.
    May V; Koch L; Fischer-Zirnsak B; Horn D; Gehle P; Kornak U; Beule D; Holtgrewe M
    Bioinformatics; 2022 Aug; 38(16):3871-3876. PubMed ID: 35751599
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 6.