BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

180 related articles for article (PubMed ID: 35100420)

  • 1. Dysgu: efficient structural variant calling using short or long reads.
    Cleal K; Baird DM
    Nucleic Acids Res; 2022 May; 50(9):e53. PubMed ID: 35100420
    [TBL] [Abstract][Full Text] [Related]  

  • 2. SvABA: genome-wide detection of structural variants and indels by local assembly.
    Wala JA; Bandopadhayay P; Greenwald NF; O'Rourke R; Sharpe T; Stewart C; Schumacher S; Li Y; Weischenfeldt J; Yao X; Nusbaum C; Campbell P; Getz G; Meyerson M; Zhang CZ; Imielinski M; Beroukhim R
    Genome Res; 2018 Apr; 28(4):581-591. PubMed ID: 29535149
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Precise characterization of somatic complex structural variations from tumor/control paired long-read sequencing data with nanomonsv.
    Shiraishi Y; Koya J; Chiba K; Okada A; Arai Y; Saito Y; Shibata T; Kataoka K
    Nucleic Acids Res; 2023 Aug; 51(14):e74. PubMed ID: 37336583
    [TBL] [Abstract][Full Text] [Related]  

  • 4. SVJedi: genotyping structural variations with long reads.
    Lecompte L; Peterlongo P; Lavenier D; Lemaitre C
    Bioinformatics; 2020 Nov; 36(17):4568-4575. PubMed ID: 32437523
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Automated filtering of genome-wide large deletions through an ensemble deep learning framework.
    Hu Y; Mangal S; Zhang L; Zhou X
    Methods; 2022 Oct; 206():77-86. PubMed ID: 36038049
    [TBL] [Abstract][Full Text] [Related]  

  • 6. LinkedSV for detection of mosaic structural variants from linked-read exome and genome sequencing data.
    Fang L; Kao C; Gonzalez MV; Mafra FA; Pellegrino da Silva R; Li M; Wenzel SS; Wimmer K; Hakonarson H; Wang K
    Nat Commun; 2019 Dec; 10(1):5585. PubMed ID: 31811119
    [TBL] [Abstract][Full Text] [Related]  

  • 7. GASOLINE: detecting germline and somatic structural variants from long-reads data.
    Magi A; Mattei G; Mingrino A; Caprioli C; Ronchini C; Frigè G; Semeraro R; Baragli M; Bolognini D; Colombo E; Mazzarella L; Pelicci PG
    Sci Rep; 2023 Nov; 13(1):20817. PubMed ID: 38012350
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Identification of genomic indels and structural variations using split reads.
    Zhang ZD; Du J; Lam H; Abyzov A; Urban AE; Snyder M; Gerstein M
    BMC Genomics; 2011 Jul; 12():375. PubMed ID: 21787423
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The challenge of detecting indels in bacterial genomes from short-read sequencing data.
    Steglich M; Nübel U
    J Biotechnol; 2017 May; 250():11-15. PubMed ID: 28267569
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Characterization of structural variants with single molecule and hybrid sequencing approaches.
    Ritz A; Bashir A; Sindi S; Hsu D; Hajirasouliha I; Raphael BJ
    Bioinformatics; 2014 Dec; 30(24):3458-66. PubMed ID: 25355789
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Detecting genomic deletions from high-throughput sequence data with unsupervised learning.
    Li X; Wu Y
    BMC Bioinformatics; 2023 Jan; 23(Suppl 8):568. PubMed ID: 36707775
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Comparison of structural variants detected by PacBio-CLR and ONT sequencing in pear.
    Liu Y; Zhang M; Wang R; Li B; Jiang Y; Sun M; Chang Y; Wu J
    BMC Genomics; 2022 Dec; 23(1):830. PubMed ID: 36517766
    [TBL] [Abstract][Full Text] [Related]  

  • 13. BatAlign: an incremental method for accurate alignment of sequencing reads.
    Lim JQ; Tennakoon C; Guan P; Sung WK
    Nucleic Acids Res; 2015 Sep; 43(16):e107. PubMed ID: 26170239
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Robust and exact structural variation detection with paired-end and soft-clipped alignments: SoftSV compared with eight algorithms.
    Bartenhagen C; Dugas M
    Brief Bioinform; 2016 Jan; 17(1):51-62. PubMed ID: 25998133
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Detection and visualization of complex structural variants from long reads.
    Stephens Z; Wang C; Iyer RK; Kocher JP
    BMC Bioinformatics; 2018 Dec; 19(Suppl 20):508. PubMed ID: 30577744
    [TBL] [Abstract][Full Text] [Related]  

  • 16. SVNN: an efficient PacBio-specific pipeline for structural variations calling using neural networks.
    Akbarinejad S; Hadadian Nejad Yousefi M; Goudarzi M
    BMC Bioinformatics; 2021 Jun; 22(1):335. PubMed ID: 34147063
    [TBL] [Abstract][Full Text] [Related]  

  • 17. A recurrence-based approach for validating structural variation using long-read sequencing technology.
    Zhao X; Weber AM; Mills RE
    Gigascience; 2017 Aug; 6(8):1-9. PubMed ID: 28873962
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Comprehensive de novo mutation discovery with HiFi long-read sequencing.
    Kucuk E; van der Sanden BPGH; O'Gorman L; Kwint M; Derks R; Wenger AM; Lambert C; Chakraborty S; Baybayan P; Rowell WJ; Brunner HG; Vissers LELM; Hoischen A; Gilissen C
    Genome Med; 2023 May; 15(1):34. PubMed ID: 37158973
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Detection of structural variants involving repetitive regions in the reference genome.
    Lee H; Popodi E; Foster PL; Tang H
    J Comput Biol; 2014 Mar; 21(3):219-33. PubMed ID: 24552580
    [TBL] [Abstract][Full Text] [Related]  

  • 20. SVLR: Genome Structural Variant Detection Using Long-Read Sequencing Data.
    Gu W; Zhou A; Wang L; Sun S; Cui X; Zhu D
    J Comput Biol; 2021 Aug; 28(8):774-788. PubMed ID: 33973820
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.