These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 35128343)

  • 1. PyRosetta Jupyter Notebooks Teach Biomolecular Structure Prediction and Design.
    Le KH; Adolf-Bryfogle J; Klima JC; Lyskov S; Labonte J; Bertolani S; Burman SSR; Leaver-Fay A; Weitzner B; Maguire J; Rangan R; Adrianowycz MA; Alford RF; Adal A; Nance ML; Wu Y; Willis J; Kulp DW; Das R; Dunbrack RL; Schief W; Kuhlman B; Siegel JB; Gray JJ
    Biophysicist (Rockv); 2021 Apr; 2(1):108-122. PubMed ID: 35128343
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Visualizing protein big data using Python and Jupyter notebooks.
    Weiss CJ
    Biochem Mol Biol Educ; 2022 Sep; 50(5):431-436. PubMed ID: 35403803
    [TBL] [Abstract][Full Text] [Related]  

  • 3. JBrowse Jupyter: a Python interface to JBrowse 2.
    De Jesus Martinez T; Hershberg EA; Guo E; Stevens GJ; Diesh C; Xie P; Bridge C; Cain S; Haw R; Buels RM; Stein LD; Holmes IH
    Bioinformatics; 2023 Jan; 39(1):. PubMed ID: 36648320
    [TBL] [Abstract][Full Text] [Related]  

  • 4. PyRosetta: a script-based interface for implementing molecular modeling algorithms using Rosetta.
    Chaudhury S; Lyskov S; Gray JJ
    Bioinformatics; 2010 Mar; 26(5):689-91. PubMed ID: 20061306
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Interactive network visualization in Jupyter notebooks: visJS2jupyter.
    Rosenthal SB; Len J; Webster M; Gary A; Birmingham A; Fisch KM
    Bioinformatics; 2018 Jan; 34(1):126-128. PubMed ID: 28968701
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Analyzing biological models and data sets using Jupyter notebooks as an alternate to laboratory-based exercises during COVID-19.
    Pillay CS
    Biochem Mol Biol Educ; 2020 Sep; 48(5):532-534. PubMed ID: 33462960
    [TBL] [Abstract][Full Text] [Related]  

  • 7. CCPA: cloud-based, self-learning modules for consensus pathway analysis using GO, KEGG and Reactome.
    Nguyen H; Pham VD; Nguyen H; Tran B; Petereit J; Nguyen T
    Brief Bioinform; 2024 Jul; 25(Supplement_1):. PubMed ID: 39041916
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Using interactive digital notebooks for bioscience and informatics education.
    Davies A; Hooley F; Causey-Freeman P; Eleftheriou I; Moulton G
    PLoS Comput Biol; 2020 Nov; 16(11):e1008326. PubMed ID: 33151926
    [TBL] [Abstract][Full Text] [Related]  

  • 9. InteractiveROSETTA: a graphical user interface for the PyRosetta protein modeling suite.
    Schenkelberg CD; Bystroff C
    Bioinformatics; 2015 Dec; 31(24):4023-5. PubMed ID: 26315900
    [TBL] [Abstract][Full Text] [Related]  

  • 10. NGLview-interactive molecular graphics for Jupyter notebooks.
    Nguyen H; Case DA; Rose AS
    Bioinformatics; 2018 Apr; 34(7):1241-1242. PubMed ID: 29236954
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Computational reproducibility of Jupyter notebooks from biomedical publications.
    Samuel S; Mietchen D
    Gigascience; 2024 Jan; 13():. PubMed ID: 38206590
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Reproducible Bioconductor workflows using browser-based interactive notebooks and containers.
    Almugbel R; Hung LH; Hu J; Almutairy A; Ortogero N; Tamta Y; Yeung KY
    J Am Med Inform Assoc; 2018 Jan; 25(1):4-12. PubMed ID: 29092073
    [TBL] [Abstract][Full Text] [Related]  

  • 13. TeachOpenCADD: a teaching platform for computer-aided drug design using open source packages and data.
    Sydow D; Morger A; Driller M; Volkamer A
    J Cheminform; 2019 Apr; 11(1):29. PubMed ID: 30963287
    [TBL] [Abstract][Full Text] [Related]  

  • 14. pyGOMoDo: GPCRs modeling and docking with python.
    Ribeiro RP; Giorgetti A
    Bioinformatics; 2023 May; 39(5):. PubMed ID: 37137232
    [TBL] [Abstract][Full Text] [Related]  

  • 15. PyChimera: use UCSF Chimera modules in any Python 2.7 project.
    Rodríguez-Guerra Pedregal J; Maréchal JD
    Bioinformatics; 2018 May; 34(10):1784-1785. PubMed ID: 29340616
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Using interactive Jupyter Notebooks and BioConda for FAIR and reproducible biomolecular simulation workflows.
    Bayarri G; Andrio P; Gelpí JL; Hospital A; Orozco M
    PLoS Comput Biol; 2024 Jun; 20(6):e1012173. PubMed ID: 38900779
    [TBL] [Abstract][Full Text] [Related]  

  • 17. TeachOpenCADD 2022: open source and FAIR Python pipelines to assist in structural bioinformatics and cheminformatics research.
    Sydow D; Rodríguez-Guerra J; Kimber TB; Schaller D; Taylor CJ; Chen Y; Leja M; Misra S; Wichmann M; Ariamajd A; Volkamer A
    Nucleic Acids Res; 2022 Jul; 50(W1):W753-W760. PubMed ID: 35524571
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Appyters: Turning Jupyter Notebooks into data-driven web apps.
    Clarke DJB; Jeon M; Stein DJ; Moiseyev N; Kropiwnicki E; Dai C; Xie Z; Wojciechowicz ML; Litz S; Hom J; Evangelista JE; Goldman L; Zhang S; Yoon C; Ahamed T; Bhuiyan S; Cheng M; Karam J; Jagodnik KM; Shu I; Lachmann A; Ayling S; Jenkins SL; Ma'ayan A
    Patterns (N Y); 2021 Mar; 2(3):100213. PubMed ID: 33748796
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Python scripting for biochemistry and molecular biology in Jupyter Notebooks.
    Craig PA; Nash JA; Crawford TD
    Biochem Mol Biol Educ; 2022 Sep; 50(5):479-482. PubMed ID: 36093574
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Biotechnology Data Analysis Training with Jupyter Notebooks.
    Liebal UW; Schimassek R; Broderius I; Maaßen N; Vogelgesang A; Weyers P; Blank LM
    J Microbiol Biol Educ; 2023 Apr; 24(1):. PubMed ID: 37089214
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.