230 related articles for article (PubMed ID: 35132134)
21. QuickMod: A tool for open modification spectrum library searches.
Ahrné E; Nikitin F; Lisacek F; Müller M
J Proteome Res; 2011 Jul; 10(7):2913-21. PubMed ID: 21500769
[TBL] [Abstract][Full Text] [Related]
22. A Fast and Memory-Efficient Spectral Library Search Algorithm Using Locality-Sensitive Hashing.
Wang L; Liu K; Li S; Tang H
Proteomics; 2020 Nov; 20(21-22):e2000002. PubMed ID: 32415809
[TBL] [Abstract][Full Text] [Related]
23. Characterization of Cerebrospinal Fluid via Data-Independent Acquisition Mass Spectrometry.
Barkovits K; Linden A; Galozzi S; Schilde L; Pacharra S; Mollenhauer B; Stoepel N; Steinbach S; May C; Uszkoreit J; Eisenacher M; Marcus K
J Proteome Res; 2018 Oct; 17(10):3418-3430. PubMed ID: 30207155
[TBL] [Abstract][Full Text] [Related]
24. Removing the Hidden Data Dependency of DIA with Predicted Spectral Libraries.
Van Puyvelde B; Willems S; Gabriels R; Daled S; De Clerck L; Vande Casteele S; Staes A; Impens F; Deforce D; Martens L; Degroeve S; Dhaenens M
Proteomics; 2020 Feb; 20(3-4):e1900306. PubMed ID: 31981311
[TBL] [Abstract][Full Text] [Related]
25. Semisupervised Machine Learning for Sensitive Open Modification Spectral Library Searching.
Arab I; Fondrie WE; Laukens K; Bittremieux W
J Proteome Res; 2023 Feb; 22(2):585-593. PubMed ID: 36688569
[TBL] [Abstract][Full Text] [Related]
26. Data-Independent Acquisition Mass Spectrometry-Based Proteomics and Software Tools: A Glimpse in 2020.
Zhang F; Ge W; Ruan G; Cai X; Guo T
Proteomics; 2020 Sep; 20(17-18):e1900276. PubMed ID: 32275110
[TBL] [Abstract][Full Text] [Related]
27. Multiplexed peptide analysis using data-independent acquisition and Skyline.
Egertson JD; MacLean B; Johnson R; Xuan Y; MacCoss MJ
Nat Protoc; 2015 Jun; 10(6):887-903. PubMed ID: 25996789
[TBL] [Abstract][Full Text] [Related]
28. Hunting for unexpected post-translational modifications by spectral library searching with tier-wise scoring.
Ma CW; Lam H
J Proteome Res; 2014 May; 13(5):2262-71. PubMed ID: 24661115
[TBL] [Abstract][Full Text] [Related]
29. In silico spectral libraries by deep learning facilitate data-independent acquisition proteomics.
Yang Y; Liu X; Shen C; Lin Y; Yang P; Qiao L
Nat Commun; 2020 Jan; 11(1):146. PubMed ID: 31919359
[TBL] [Abstract][Full Text] [Related]
30. Acquiring and Analyzing Data Independent Acquisition Proteomics Experiments without Spectrum Libraries.
Pino LK; Just SC; MacCoss MJ; Searle BC
Mol Cell Proteomics; 2020 Jul; 19(7):1088-1103. PubMed ID: 32312845
[TBL] [Abstract][Full Text] [Related]
31. Sample Fractionation Techniques for CSF Peptide Spectral Library Generation.
Pacharra S; Marcus K; May C
Methods Mol Biol; 2019; 2044():69-77. PubMed ID: 31432407
[TBL] [Abstract][Full Text] [Related]
32. Spectral library searching in proteomics.
Griss J
Proteomics; 2016 Mar; 16(5):729-40. PubMed ID: 26616598
[TBL] [Abstract][Full Text] [Related]
33. Merging Full-Spectrum and Fragment Ion Intensity Predictions from Deep Learning for High-Quality Spectral Libraries.
Chan CMJ; Lam H
J Proteome Res; 2023 Dec; 22(12):3692-3702. PubMed ID: 37910637
[TBL] [Abstract][Full Text] [Related]
34. PASS-DIA: A Data-Independent Acquisition Approach for Discovery Studies.
Mun DG; Renuse S; Saraswat M; Madugundu A; Udainiya S; Kim H; Park SR; Zhao H; Nirujogi RS; Na CH; Kannan N; Yates JR; Lee SW; Pandey A
Anal Chem; 2020 Nov; 92(21):14466-14475. PubMed ID: 33079518
[TBL] [Abstract][Full Text] [Related]
35. Spectral library searching for peptide identification via tandem MS.
Lam H; Aebersold R
Methods Mol Biol; 2010; 604():95-103. PubMed ID: 20013366
[TBL] [Abstract][Full Text] [Related]
36. Micro-Data-Independent Acquisition for High-Throughput Proteomics and Sensitive Peptide Mass Spectrum Identification.
Heaven MR; Cobbs AL; Nei YW; Gutierrez DB; Herren AW; Gunawardena HP; Caprioli RM; Norris JL
Anal Chem; 2018 Aug; 90(15):8905-8911. PubMed ID: 29984981
[TBL] [Abstract][Full Text] [Related]
37. Systematic Assessment of the Effect of Internal Library in Targeted Analysis of SWATH-MS.
Zhong CQ; Wu R; Chen X; Wu S; Shuai J; Han J
J Proteome Res; 2020 Jan; 19(1):477-492. PubMed ID: 31664839
[TBL] [Abstract][Full Text] [Related]
38. A Data Analysis Protocol for Quantitative Data-Independent Acquisition Proteomics.
Pietilä S; Suomi T; Aakko J; Elo LL
Methods Mol Biol; 2019; 1871():455-465. PubMed ID: 30276755
[TBL] [Abstract][Full Text] [Related]
39. COSS: A Fast and User-Friendly Tool for Spectral Library Searching.
Shiferaw GA; Vandermarliere E; Hulstaert N; Gabriels R; Martens L; Volders PJ
J Proteome Res; 2020 Jul; 19(7):2786-2793. PubMed ID: 32384242
[TBL] [Abstract][Full Text] [Related]
40. A simulated MS/MS library for spectrum-to-spectrum searching in large scale identification of proteins.
Yen CY; Meyer-Arendt K; Eichelberger B; Sun S; Houel S; Old WM; Knight R; Ahn NG; Hunter LE; Resing KA
Mol Cell Proteomics; 2009 Apr; 8(4):857-69. PubMed ID: 19106086
[TBL] [Abstract][Full Text] [Related]
[Previous] [Next] [New Search]
