171 related articles for article (PubMed ID: 35134925)
1. An improved ovine reference genome assembly to facilitate in-depth functional annotation of the sheep genome.
Davenport KM; Bickhart DM; Worley K; Murali SC; Salavati M; Clark EL; Cockett NE; Heaton MP; Smith TPL; Murdoch BM; Rosen BD
Gigascience; 2022 Feb; 11():. PubMed ID: 35134925
[TBL] [Abstract][Full Text] [Related]
2. Chromosome-scale assembly comparison of the Korean Reference Genome KOREF from PromethION and PacBio with Hi-C mapping information.
Kim HS; Jeon S; Kim C; Kim YK; Cho YS; Kim J; Blazyte A; Manica A; Lee S; Bhak J
Gigascience; 2019 Dec; 8(12):. PubMed ID: 31794015
[TBL] [Abstract][Full Text] [Related]
3. Construction of a chromosome-scale long-read reference genome assembly for potato.
Pham GM; Hamilton JP; Wood JC; Burke JT; Zhao H; Vaillancourt B; Ou S; Jiang J; Buell CR
Gigascience; 2020 Sep; 9(9):. PubMed ID: 32964225
[TBL] [Abstract][Full Text] [Related]
4. De novo assembly of a chromosome-level reference genome of red-spotted grouper (Epinephelus akaara) using nanopore sequencing and Hi-C.
Ge H; Lin K; Shen M; Wu S; Wang Y; Zhang Z; Wang Z; Zhang Y; Huang Z; Zhou C; Lin Q; Wu J; Liu L; Hu J; Huang Z; Zheng L
Mol Ecol Resour; 2019 Nov; 19(6):1461-1469. PubMed ID: 31325912
[TBL] [Abstract][Full Text] [Related]
5. Benchmarking of long-read assemblers for prokaryote whole genome sequencing.
Wick RR; Holt KE
F1000Res; 2019; 8():2138. PubMed ID: 31984131
[No Abstract] [Full Text] [Related]
6. De novo assembly of the Indian blue peacock (Pavo cristatus) genome using Oxford Nanopore technology and Illumina sequencing.
Dhar R; Seethy A; Pethusamy K; Singh S; Rohil V; Purkayastha K; Mukherjee I; Goswami S; Singh R; Raj A; Srivastava T; Acharya S; Rajashekhar B; Karmakar S
Gigascience; 2019 May; 8(5):. PubMed ID: 31077316
[TBL] [Abstract][Full Text] [Related]
7. MinION-based long-read sequencing and assembly extends the
Tyson JR; O'Neil NJ; Jain M; Olsen HE; Hieter P; Snutch TP
Genome Res; 2018 Feb; 28(2):266-274. PubMed ID: 29273626
[TBL] [Abstract][Full Text] [Related]
8. Canfam_GSD: De novo chromosome-length genome assembly of the German Shepherd Dog (Canis lupus familiaris) using a combination of long reads, optical mapping, and Hi-C.
Field MA; Rosen BD; Dudchenko O; Chan EKF; Minoche AE; Edwards RJ; Barton K; Lyons RJ; Tuipulotu DE; Hayes VM; D Omer A; Colaric Z; Keilwagen J; Skvortsova K; Bogdanovic O; Smith MA; Aiden EL; Smith TPL; Zammit RA; Ballard JWO
Gigascience; 2020 Apr; 9(4):. PubMed ID: 32236524
[TBL] [Abstract][Full Text] [Related]
9. De novo genome assembly of a Han Chinese male and genome-wide detection of structural variants using Oxford Nanopore sequencing.
Cai R; Dong Y; Fang M; Guo C; Ma X
Mol Genet Genomics; 2020 Jul; 295(4):871-876. PubMed ID: 32274588
[TBL] [Abstract][Full Text] [Related]
10. Pacific Biosciences assembly with Hi-C mapping generates an improved, chromosome-level goose genome.
Li Y; Gao G; Lin Y; Hu S; Luo Y; Wang G; Jin L; Wang Q; Wang J; Tang Q; Li M
Gigascience; 2020 Oct; 9(10):. PubMed ID: 33099628
[TBL] [Abstract][Full Text] [Related]
11. Chromosomal-level assembly of the blood clam, Scapharca (Anadara) broughtonii, using long sequence reads and Hi-C.
Bai CM; Xin LS; Rosani U; Wu B; Wang QC; Duan XK; Liu ZH; Wang CM
Gigascience; 2019 Jul; 8(7):. PubMed ID: 31289832
[TBL] [Abstract][Full Text] [Related]
12. KOREF_S1: phased, parental trio-binned Korean reference genome using long reads and Hi-C sequencing methods.
Kim HS; Jeon S; Kim Y; Kim C; Bhak J; Bhak J
Gigascience; 2022 Mar; 11():. PubMed ID: 35333300
[TBL] [Abstract][Full Text] [Related]
13. LT1, an ONT long-read-based assembly scaffolded with Hi-C data and polished with short reads.
Kim HS; Blazyte A; Jeon S; Yoon C; Kim Y; Kim C; Bolser D; Ahn JH; Edwards JS; Bhak J
GigaByte; 2022; 2022():gigabyte51. PubMed ID: 36824523
[TBL] [Abstract][Full Text] [Related]
14. Genetic Basis of Dorper Sheep (
Qiao G; Xu P; Guo T; Wu Y; Lu X; Zhang Q; He X; Zhu S; Zhao H; Lei Z; Sun W; Yang B; Yue Y
Front Genet; 2022; 13():846449. PubMed ID: 35480318
[TBL] [Abstract][Full Text] [Related]
15. Optical maps refine the bread wheat Triticum aestivum cv. Chinese Spring genome assembly.
Zhu T; Wang L; Rimbert H; Rodriguez JC; Deal KR; De Oliveira R; Choulet F; Keeble-Gagnère G; Tibbits J; Rogers J; Eversole K; Appels R; Gu YQ; Mascher M; Dvorak J; Luo MC
Plant J; 2021 Jul; 107(1):303-314. PubMed ID: 33893684
[TBL] [Abstract][Full Text] [Related]
16. Rapid Low-Cost Assembly of the
Solares EA; Chakraborty M; Miller DE; Kalsow S; Hall K; Perera AG; Emerson JJ; Hawley RS
G3 (Bethesda); 2018 Oct; 8(10):3143-3154. PubMed ID: 30018084
[TBL] [Abstract][Full Text] [Related]
17. De novo assembly of a wild swan goose (Anser cygnoides) genome.
Zhang Y; Ni H; Xie H; Yin Y; Zheng J; Dong L; Diao J; Yan S; Yang Y; Sun H; Sun X
Anim Genet; 2022 Dec; 53(6):878-880. PubMed ID: 36086875
[TBL] [Abstract][Full Text] [Related]
18. Chromosome-level genome assembly and annotation of the loquat (Eriobotrya japonica) genome.
Jiang S; An H; Xu F; Zhang X
Gigascience; 2020 Mar; 9(3):. PubMed ID: 32141509
[TBL] [Abstract][Full Text] [Related]
19. High-quality genome assembly of Huazhan and Tianfeng, the parents of an elite rice hybrid Tian-you-hua-zhan.
Zhang H; Wang Y; Deng C; Zhao S; Zhang P; Feng J; Huang W; Kang S; Qian Q; Xiong G; Chang Y
Sci China Life Sci; 2022 Feb; 65(2):398-411. PubMed ID: 34251582
[TBL] [Abstract][Full Text] [Related]
20. TGS-GapCloser: A fast and accurate gap closer for large genomes with low coverage of error-prone long reads.
Xu M; Guo L; Gu S; Wang O; Zhang R; Peters BA; Fan G; Liu X; Xu X; Deng L; Zhang Y
Gigascience; 2020 Sep; 9(9):. PubMed ID: 32893860
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
