These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

151 related articles for article (PubMed ID: 35139149)

  • 1. Performance optimization in DNA short-read alignment.
    Wilton R; Szalay AS
    Bioinformatics; 2022 Apr; 38(8):2081-2087. PubMed ID: 35139149
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Short-read aligner performance in germline variant identification.
    Wilton R; Szalay AS
    Bioinformatics; 2023 Aug; 39(8):. PubMed ID: 37527006
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Arioc: GPU-accelerated alignment of short bisulfite-treated reads.
    Wilton R; Li X; Feinberg AP; Szalay AS
    Bioinformatics; 2018 Aug; 34(15):2673-2675. PubMed ID: 29554207
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GateKeeper: a new hardware architecture for accelerating pre-alignment in DNA short read mapping.
    Alser M; Hassan H; Xin H; Ergin O; Mutlu O; Alkan C
    Bioinformatics; 2017 Nov; 33(21):3355-3363. PubMed ID: 28575161
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Faster single-end alignment generation utilizing multi-thread for BWA.
    Jo H; Koh G
    Biomed Mater Eng; 2015; 26 Suppl 1():S1791-6. PubMed ID: 26405948
    [TBL] [Abstract][Full Text] [Related]  

  • 6. A fast read alignment method based on seed-and-vote for next generation sequencing.
    Liu S; Wang Y; Wang F
    BMC Bioinformatics; 2016 Dec; 17(Suppl 17):466. PubMed ID: 28155631
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Arioc: High-concurrency short-read alignment on multiple GPUs.
    Wilton R; Szalay AS
    PLoS Comput Biol; 2020 Nov; 16(11):e1008383. PubMed ID: 33166275
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Ψ-RA: a parallel sparse index for genomic read alignment.
    Oğuzhan Külekci M; Hon WK; Shah R; Scott Vitter J; Xu B
    BMC Genomics; 2011; 12 Suppl 2(Suppl 2):S7. PubMed ID: 21989248
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Long read alignment based on maximal exact match seeds.
    Liu Y; Schmidt B
    Bioinformatics; 2012 Sep; 28(18):i318-i324. PubMed ID: 22962447
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Comparative analysis of algorithms for next-generation sequencing read alignment.
    Ruffalo M; LaFramboise T; Koyutürk M
    Bioinformatics; 2011 Oct; 27(20):2790-6. PubMed ID: 21856737
    [TBL] [Abstract][Full Text] [Related]  

  • 11. A hybrid short read mapping accelerator.
    Chen Y; Schmidt B; Maskell DL
    BMC Bioinformatics; 2013 Feb; 14():67. PubMed ID: 23441908
    [TBL] [Abstract][Full Text] [Related]  

  • 12. PipeMEM: A Framework to Speed Up BWA-MEM in Spark with Low Overhead.
    Zhang L; Liu C; Dong S
    Genes (Basel); 2019 Nov; 10(11):. PubMed ID: 31689965
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Vargas: heuristic-free alignment for assessing linear and graph read aligners.
    Darby CA; Gaddipati R; Schatz MC; Langmead B
    Bioinformatics; 2020 Jun; 36(12):3712-3718. PubMed ID: 32321164
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Aligner optimization increases accuracy and decreases compute times in multi-species sequence data.
    Robinson KM; Hawkins AS; Santana-Cruz I; Adkins RS; Shetty AC; Nagaraj S; Sadzewicz L; Tallon LJ; Rasko DA; Fraser CM; Mahurkar A; Silva JC; Dunning Hotopp JC
    Microb Genom; 2017 Sep; 3(9):e000122. PubMed ID: 29114401
    [TBL] [Abstract][Full Text] [Related]  

  • 15. MICA: A fast short-read aligner that takes full advantage of Many Integrated Core Architecture (MIC).
    Luo R; Cheung J; Wu E; Wang H; Chan SH; Law WC; He G; Yu C; Liu CM; Zhou D; Li Y; Li R; Wang J; Zhu X; Peng S; Lam TW
    BMC Bioinformatics; 2015; 16 Suppl 7(Suppl 7):S10. PubMed ID: 25952019
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Multi-threading the generation of Burrows-Wheeler Alignment.
    Jo H
    Genet Mol Res; 2016 May; 15(2):. PubMed ID: 27323088
    [TBL] [Abstract][Full Text] [Related]  

  • 17. BWA-MEME: BWA-MEM emulated with a machine learning approach.
    Jung Y; Han D
    Bioinformatics; 2022 Apr; 38(9):2404-2413. PubMed ID: 35253835
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Benchmarking short sequence mapping tools.
    Hatem A; Bozdağ D; Toland AE; Çatalyürek ÜV
    BMC Bioinformatics; 2013 Jun; 14():184. PubMed ID: 23758764
    [TBL] [Abstract][Full Text] [Related]  

  • 19. CUSHAW: a CUDA compatible short read aligner to large genomes based on the Burrows-Wheeler transform.
    Liu Y; Schmidt B; Maskell DL
    Bioinformatics; 2012 Jul; 28(14):1830-7. PubMed ID: 22576173
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Short Sequence Aligner Benchmarking for Chromatin Research.
    Carter JL; Stevens H; Ridge PG; Johnson SM
    Int J Mol Sci; 2023 Sep; 24(18):. PubMed ID: 37762379
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.