270 related articles for article (PubMed ID: 35168570)
1. MutationalPatterns: the one stop shop for the analysis of mutational processes.
Manders F; Brandsma AM; de Kanter J; Verheul M; Oka R; van Roosmalen MJ; van der Roest B; van Hoeck A; Cuppen E; van Boxtel R
BMC Genomics; 2022 Feb; 23(1):134. PubMed ID: 35168570
[TBL] [Abstract][Full Text] [Related]
2. MutationalPatterns: comprehensive genome-wide analysis of mutational processes.
Blokzijl F; Janssen R; van Boxtel R; Cuppen E
Genome Med; 2018 Apr; 10(1):33. PubMed ID: 29695279
[TBL] [Abstract][Full Text] [Related]
3. Analysis of mutational signatures with yet another package for signature analysis.
Hübschmann D; Jopp-Saile L; Andresen C; Krämer S; Gu Z; Heilig CE; Kreutzfeldt S; Teleanu V; Fröhling S; Eils R; Schlesner M
Genes Chromosomes Cancer; 2021 May; 60(5):314-331. PubMed ID: 33222322
[TBL] [Abstract][Full Text] [Related]
4. Mechanisms underlying mutational signatures in human cancers.
Helleday T; Eshtad S; Nik-Zainal S
Nat Rev Genet; 2014 Sep; 15(9):585-98. PubMed ID: 24981601
[TBL] [Abstract][Full Text] [Related]
5. SigProfilerMatrixGenerator: a tool for visualizing and exploring patterns of small mutational events.
Bergstrom EN; Huang MN; Mahto U; Barnes M; Stratton MR; Rozen SG; Alexandrov LB
BMC Genomics; 2019 Aug; 20(1):685. PubMed ID: 31470794
[TBL] [Abstract][Full Text] [Related]
6. Mutational Signatures in Cancer (MuSiCa): a web application to implement mutational signatures analysis in cancer samples.
Díaz-Gay M; Vila-Casadesús M; Franch-Expósito S; Hernández-Illán E; Lozano JJ; Castellví-Bel S
BMC Bioinformatics; 2018 Jun; 19(1):224. PubMed ID: 29898651
[TBL] [Abstract][Full Text] [Related]
7. Mutational spectra and mutational signatures: Insights into cancer aetiology and mechanisms of DNA damage and repair.
Phillips DH
DNA Repair (Amst); 2018 Nov; 71():6-11. PubMed ID: 30236628
[TBL] [Abstract][Full Text] [Related]
8. decompTumor2Sig: identification of mutational signatures active in individual tumors.
Krüger S; Piro RM
BMC Bioinformatics; 2019 Apr; 20(Suppl 4):152. PubMed ID: 30999866
[TBL] [Abstract][Full Text] [Related]
9. Cancer Mutational Processes Vary in Their Association with Replication Timing and Chromatin Accessibility.
Yaacov A; Vardi O; Blumenfeld B; Greenberg A; Massey DJ; Koren A; Adar S; Simon I; Rosenberg S
Cancer Res; 2021 Dec; 81(24):6106-6116. PubMed ID: 34702725
[TBL] [Abstract][Full Text] [Related]
10. SigsPack, a package for cancer mutational signatures.
Schumann F; Blanc E; Messerschmidt C; Blankenstein T; Busse A; Beule D
BMC Bioinformatics; 2019 Sep; 20(1):450. PubMed ID: 31477009
[TBL] [Abstract][Full Text] [Related]
11. The shaping of cancer genomes with the regional impact of mutation processes.
Lee SY; Wang H; Cho HJ; Xi R; Kim TM
Exp Mol Med; 2022 Jul; 54(7):1049-1060. PubMed ID: 35902761
[TBL] [Abstract][Full Text] [Related]
12. A framework for mutational signature analysis based on DNA shape parameters.
Karolak A; Levatić J; Supek F
PLoS One; 2022; 17(1):e0262495. PubMed ID: 35015788
[TBL] [Abstract][Full Text] [Related]
13. Patterns and processes of somatic mutations in nine major cancers.
Jia P; Pao W; Zhao Z
BMC Med Genomics; 2014 Feb; 7():11. PubMed ID: 24552141
[TBL] [Abstract][Full Text] [Related]
14. Bioinformatic Methods to Identify Mutational Signatures in Cancer.
Islam SMA; Alexandrov LB
Methods Mol Biol; 2021; 2185():447-473. PubMed ID: 33165866
[TBL] [Abstract][Full Text] [Related]
15. Analysis of Mutational Signatures Using the mutSignatures R Library.
Fantini D; Meeks JJ
Methods Mol Biol; 2023; 2684():45-57. PubMed ID: 37410227
[TBL] [Abstract][Full Text] [Related]
16. MutSignatures: an R package for extraction and analysis of cancer mutational signatures.
Fantini D; Vidimar V; Yu Y; Condello S; Meeks JJ
Sci Rep; 2020 Oct; 10(1):18217. PubMed ID: 33106540
[TBL] [Abstract][Full Text] [Related]
17. The repertoire of mutational signatures in human cancer.
Alexandrov LB; Kim J; Haradhvala NJ; Huang MN; Tian Ng AW; Wu Y; Boot A; Covington KR; Gordenin DA; Bergstrom EN; Islam SMA; Lopez-Bigas N; Klimczak LJ; McPherson JR; Morganella S; Sabarinathan R; Wheeler DA; Mustonen V; ; Getz G; Rozen SG; Stratton MR;
Nature; 2020 Feb; 578(7793):94-101. PubMed ID: 32025018
[TBL] [Abstract][Full Text] [Related]
18. Regional mutational signature activities in cancer genomes.
Timmons C; Morris Q; Harrigan CF
PLoS Comput Biol; 2022 Dec; 18(12):e1010733. PubMed ID: 36469539
[TBL] [Abstract][Full Text] [Related]
19. The Mutational Signature Comprehensive Analysis Toolkit (musicatk) for the Discovery, Prediction, and Exploration of Mutational Signatures.
Chevalier A; Yang S; Khurshid Z; Sahelijo N; Tong T; Huggins JH; Yajima M; Campbell JD
Cancer Res; 2021 Dec; 81(23):5813-5817. PubMed ID: 34625425
[TBL] [Abstract][Full Text] [Related]
20. Computational tools to detect signatures of mutational processes in DNA from tumours: A review and empirical comparison of performance.
Omichessan H; Severi G; Perduca V
PLoS One; 2019; 14(9):e0221235. PubMed ID: 31513583
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]