BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

234 related articles for article (PubMed ID: 35177558)

  • 1. Somatic structural variant formation is guided by and influences genome architecture.
    Sidiropoulos N; Mardin BR; Rodríguez-González FG; Bochkov ID; Garg S; Stütz AM; Korbel JO; Aiden EL; Weischenfeldt J
    Genome Res; 2022 Apr; 32(4):643-655. PubMed ID: 35177558
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Dynamic Interplay between Structural Variations and 3D Genome Organization in Pancreatic Cancer.
    Du Y; Gu Z; Li Z; Yuan Z; Zhao Y; Zheng X; Bo X; Chen H; Wang C
    Adv Sci (Weinh); 2022 Jun; 9(18):e2200818. PubMed ID: 35570408
    [TBL] [Abstract][Full Text] [Related]  

  • 3. When 3D genome changes cause disease: the impact of structural variations in congenital disease and cancer.
    Weischenfeldt J; Ibrahim DM
    Curr Opin Genet Dev; 2023 Jun; 80():102048. PubMed ID: 37156210
    [TBL] [Abstract][Full Text] [Related]  

  • 4. The effects of common structural variants on 3D chromatin structure.
    Shanta O; Noor A; ; Sebat J
    BMC Genomics; 2020 Jan; 21(1):95. PubMed ID: 32000688
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Defining the diverse spectrum of inversions, complex structural variation, and chromothripsis in the morbid human genome.
    Collins RL; Brand H; Redin CE; Hanscom C; Antolik C; Stone MR; Glessner JT; Mason T; Pregno G; Dorrani N; Mandrile G; Giachino D; Perrin D; Walsh C; Cipicchio M; Costello M; Stortchevoi A; An JY; Currall BB; Seabra CM; Ragavendran A; Margolin L; Martinez-Agosto JA; Lucente D; Levy B; Sanders SJ; Wapner RJ; Quintero-Rivera F; Kloosterman W; Talkowski ME
    Genome Biol; 2017 Mar; 18(1):36. PubMed ID: 28260531
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Analysis of Hi-C Data for Discovery of Structural Variations in Cancer.
    Song F; Xu J; Dixon J; Yue F
    Methods Mol Biol; 2022; 2301():143-161. PubMed ID: 34415534
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Structural variants drive context-dependent oncogene activation in cancer.
    Xu Z; Lee DS; Chandran S; Le VT; Bump R; Yasis J; Dallarda S; Marcotte S; Clock B; Haghani N; Cho CY; Akdemir KC; Tyndale S; Futreal PA; McVicker G; Wahl GM; Dixon JR
    Nature; 2022 Dec; 612(7940):564-572. PubMed ID: 36477537
    [TBL] [Abstract][Full Text] [Related]  

  • 8. TADeus2: a web server facilitating the clinical diagnosis by pathogenicity assessment of structural variations disarranging 3D chromatin structure.
    Poszewiecka B; Pienkowski VM; Nowosad K; Robin JD; Gogolewski K; Gambin A
    Nucleic Acids Res; 2022 Jul; 50(W1):W744-W752. PubMed ID: 35524567
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Structural variation in the 3D genome.
    Spielmann M; Lupiáñez DG; Mundlos S
    Nat Rev Genet; 2018 Jul; 19(7):453-467. PubMed ID: 29692413
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Disruption of topologically associating domains by structural variations in tetraploid cottons.
    Long Y; Liu Z; Wang P; Yang H; Wang Y; Zhang S; Zhang X; Wang M
    Genomics; 2021 Sep; 113(5):3405-3414. PubMed ID: 34311045
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Disruption of chromatin folding domains by somatic genomic rearrangements in human cancer.
    Akdemir KC; Le VT; Chandran S; Li Y; Verhaak RG; Beroukhim R; Campbell PJ; Chin L; Dixon JR; Futreal PA; ;
    Nat Genet; 2020 Mar; 52(3):294-305. PubMed ID: 32024999
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Whole-Genome Sequencing Reveals Diverse Models of Structural Variations in Esophageal Squamous Cell Carcinoma.
    Cheng C; Zhou Y; Li H; Xiong T; Li S; Bi Y; Kong P; Wang F; Cui H; Li Y; Fang X; Yan T; Li Y; Wang J; Yang B; Zhang L; Jia Z; Song B; Hu X; Yang J; Qiu H; Zhang G; Liu J; Xu E; Shi R; Zhang Y; Liu H; He C; Zhao Z; Qian Y; Rong R; Han Z; Zhang Y; Luo W; Wang J; Peng S; Yang X; Li X; Li L; Fang H; Liu X; Ma L; Chen Y; Guo S; Chen X; Xi Y; Li G; Liang J; Yang X; Guo J; Jia J; Li Q; Cheng X; Zhan Q; Cui Y
    Am J Hum Genet; 2016 Feb; 98(2):256-74. PubMed ID: 26833333
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Unravelling the tumour genome: The evolutionary and clinical impacts of structural variants in tumourigenesis.
    Hamdan A; Ewing A
    J Pathol; 2022 Jul; 257(4):479-493. PubMed ID: 35355264
    [TBL] [Abstract][Full Text] [Related]  

  • 14. 3D-GNOME 2.0: a three-dimensional genome modeling engine for predicting structural variation-driven alterations of chromatin spatial structure in the human genome.
    Wlasnowolski M; Sadowski M; Czarnota T; Jodkowska K; Szalaj P; Tang Z; Ruan Y; Plewczynski D
    Nucleic Acids Res; 2020 Jul; 48(W1):W170-W176. PubMed ID: 32442297
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Chromosome conformation capture technologies as tools to detect structural variations and their repercussion in chromatin 3D configuration.
    Stephenson-Gussinye A; Furlan-Magaril M
    Front Cell Dev Biol; 2023; 11():1219968. PubMed ID: 37457299
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Integrative detection and analysis of structural variation in cancer genomes.
    Dixon JR; Xu J; Dileep V; Zhan Y; Song F; Le VT; Yardımcı GG; Chakraborty A; Bann DV; Wang Y; Clark R; Zhang L; Yang H; Liu T; Iyyanki S; An L; Pool C; Sasaki T; Rivera-Mulia JC; Ozadam H; Lajoie BR; Kaul R; Buckley M; Lee K; Diegel M; Pezic D; Ernst C; Hadjur S; Odom DT; Stamatoyannopoulos JA; Broach JR; Hardison RC; Ay F; Noble WS; Dekker J; Gilbert DM; Yue F
    Nat Genet; 2018 Oct; 50(10):1388-1398. PubMed ID: 30202056
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SVExpress: identifying gene features altered recurrently in expression with nearby structural variant breakpoints.
    Zhang Y; Chen F; Creighton CJ
    BMC Bioinformatics; 2021 Mar; 22(1):135. PubMed ID: 33743584
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Patterns and mechanisms of structural variations in human cancer.
    Yi K; Ju YS
    Exp Mol Med; 2018 Aug; 50(8):1-11. PubMed ID: 30089796
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Polymer physics predicts the effects of structural variants on chromatin architecture.
    Bianco S; Lupiáñez DG; Chiariello AM; Annunziatella C; Kraft K; Schöpflin R; Wittler L; Andrey G; Vingron M; Pombo A; Mundlos S; Nicodemi M
    Nat Genet; 2018 May; 50(5):662-667. PubMed ID: 29662163
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Functional analysis of structural variants in single cells using Strand-seq.
    Jeong H; Grimes K; Rauwolf KK; Bruch PM; Rausch T; Hasenfeld P; Benito E; Roider T; Sabarinathan R; Porubsky D; Herbst SA; Erarslan-Uysal B; Jann JC; Marschall T; Nowak D; Bourquin JP; Kulozik AE; Dietrich S; Bornhauser B; Sanders AD; Korbel JO
    Nat Biotechnol; 2023 Jun; 41(6):832-844. PubMed ID: 36424487
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 12.