BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

183 related articles for article (PubMed ID: 35181712)

  • 1. A comparative analysis of single cell small RNA sequencing data reveals heterogeneous isomiR expression and regulation.
    Smith CM; Hutvagner G
    Sci Rep; 2022 Feb; 12(1):2834. PubMed ID: 35181712
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A highly expressed miR-101 isomiR is a functional silencing small RNA.
    Llorens F; Bañez-Coronel M; Pantano L; del Río JA; Ferrer I; Estivill X; Martí E
    BMC Genomics; 2013 Feb; 14():104. PubMed ID: 23414127
    [TBL] [Abstract][Full Text] [Related]  

  • 3. A Comprehensive Approach to Sequence-oriented IsomiR annotation (CASMIR): demonstration with IsomiR profiling in colorectal neoplasia.
    Wu CW; Evans JM; Huang S; Mahoney DW; Dukek BA; Taylor WR; Yab TC; Smyrk TC; Jen J; Kisiel JB; Ahlquist DA
    BMC Genomics; 2018 May; 19(1):401. PubMed ID: 29801434
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Small RNA-seq analysis of single porcine blastocysts revealed that maternal estradiol-17beta exposure does not affect miRNA isoform (isomiR) expression.
    Bick JT; Flöter VL; Robinson MD; Bauersachs S; Ulbrich SE
    BMC Genomics; 2018 Aug; 19(1):590. PubMed ID: 30081835
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Distinctive profile of IsomiR expression and novel microRNAs in rat heart left ventricle.
    McGahon MK; Yarham JM; Daly A; Guduric-Fuchs J; Ferguson LJ; Simpson DA; Collins A
    PLoS One; 2013; 8(6):e65809. PubMed ID: 23799049
    [TBL] [Abstract][Full Text] [Related]  

  • 6. mi-IsoNet: systems-scale microRNA landscape reveals rampant isoform-mediated gain of target interaction diversity and signaling specificity.
    Guo L; Li Y; Cirillo KM; Marick RA; Su Z; Yin X; Hua X; Mills GB; Sahni N; Yi SS
    Brief Bioinform; 2021 Sep; 22(5):. PubMed ID: 33855356
    [TBL] [Abstract][Full Text] [Related]  

  • 7. IsomiR_Window: a system for analyzing small-RNA-seq data in an integrative and user-friendly manner.
    Vasconcelos AM; Carmo MB; Ferreira B; Viegas I; Gama-Carvalho M; Ferreira A; Amaral AJ
    BMC Bioinformatics; 2021 Feb; 22(1):37. PubMed ID: 33522913
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Entropy-based model for miRNA isoform analysis.
    Wang S; Tu J; Wang L; Lu Z
    PLoS One; 2015; 10(3):e0118856. PubMed ID: 25785816
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Paired-end small RNA sequencing reveals a possible overestimation in the isomiR sequence repertoire previously reported from conventional single read data analysis.
    Sanchez Herrero JF; Pluvinet R; Luna de Haro A; Sumoy L
    BMC Bioinformatics; 2021 Apr; 22(1):215. PubMed ID: 33902448
    [TBL] [Abstract][Full Text] [Related]  

  • 10. miR-222 isoforms are differentially regulated by type-I interferon.
    Nejad C; Pillman KA; Siddle KJ; Pépin G; Änkö ML; McCoy CE; Beilharz TH; Quintana-Murci L; Goodall GJ; Bracken CP; Gantier MP
    RNA; 2018 Mar; 24(3):332-341. PubMed ID: 29263133
    [TBL] [Abstract][Full Text] [Related]  

  • 11. isomiR-SEA: an RNA-Seq analysis tool for miRNAs/isomiRs expression level profiling and miRNA-mRNA interaction sites evaluation.
    Urgese G; Paciello G; Acquaviva A; Ficarra E
    BMC Bioinformatics; 2016 Mar; 17():148. PubMed ID: 27036505
    [TBL] [Abstract][Full Text] [Related]  

  • 12. miRNA length variation during macrophage stimulation confounds the interpretation of results: implications for miRNA quantification by RT-qPCR.
    Pillman KA; Goodall GJ; Bracken CP; Gantier MP
    RNA; 2019 Feb; 25(2):232-238. PubMed ID: 30487268
    [TBL] [Abstract][Full Text] [Related]  

  • 13. 3'IsomiR Species Composition Affects Reliable Quantification of miRNA/isomiR Variants by Poly(A) RT-qPCR: Impact on Small RNA-Seq Profiling Validation.
    Ferre A; Santiago L; Sánchez-Herrero JF; López-Rodrigo O; Sánchez-Curbelo J; Sumoy L; Bassas L; Larriba S
    Int J Mol Sci; 2023 Oct; 24(20):. PubMed ID: 37895116
    [TBL] [Abstract][Full Text] [Related]  

  • 14. sRNA-seq analysis of human embryonic stem cells and definitive endoderm reveals differentially expressed microRNAs and novel IsomiRs with distinct targets.
    Hinton A; Hunter SE; Afrikanova I; Jones GA; Lopez AD; Fogel GB; Hayek A; King CC
    Stem Cells; 2014 Sep; 32(9):2360-72. PubMed ID: 24805944
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Evaluation of high-throughput isomiR identification tools: illuminating the early isomiRome of Tribolium castaneum.
    Amsel D; Vilcinskas A; Billion A
    BMC Bioinformatics; 2017 Aug; 18(1):359. PubMed ID: 28774263
    [TBL] [Abstract][Full Text] [Related]  

  • 16. miR-isomiRExp: a web-server for the analysis of expression of miRNA at the miRNA/isomiR levels.
    Guo L; Yu J; Liang T; Zou Q
    Sci Rep; 2016 Mar; 6():23700. PubMed ID: 27009551
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Comprehensive expression analysis of miRNA in breast cancer at the miRNA and isomiR levels.
    Wu X; Zeng R; Wu S; Zhong J; Yang L; Xu J
    Gene; 2015 Feb; 557(2):195-200. PubMed ID: 25523096
    [TBL] [Abstract][Full Text] [Related]  

  • 18. DeAnnIso: a tool for online detection and annotation of isomiRs from small RNA sequencing data.
    Zhang Y; Zang Q; Zhang H; Ban R; Yang Y; Iqbal F; Li A; Shi Q
    Nucleic Acids Res; 2016 Jul; 44(W1):W166-75. PubMed ID: 27179030
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Plant isomiRs: origins, biogenesis, and biological functions.
    Fard EM; Moradi S; Salekdeh NN; Bakhshi B; Ghaffari MR; Zeinalabedini M; Salekdeh GH
    Genomics; 2020 Sep; 112(5):3382-3395. PubMed ID: 32561347
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Close association between paralogous multiple isomiRs and paralogous/orthologues miRNA sequences implicates dominant sequence selection across various animal species.
    Guo L; Zhao Y; Zhang H; Yang S; Chen F
    Gene; 2013 Sep; 527(2):624-9. PubMed ID: 23856130
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 10.