These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

126 related articles for article (PubMed ID: 35213808)

  • 1. Challenges and Advantages of Accounting for Backbone Flexibility in Prediction of Protein-Protein Complexes.
    Faruk NF; Peng X; Freed KF; Roux B; Sosnick TR
    J Chem Theory Comput; 2022 Mar; 18(3):2016-2032. PubMed ID: 35213808
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Protein-protein docking with backbone flexibility.
    Wang C; Bradley P; Baker D
    J Mol Biol; 2007 Oct; 373(2):503-19. PubMed ID: 17825317
    [TBL] [Abstract][Full Text] [Related]  

  • 3. RosettaDock in CAPRI rounds 6-12.
    Wang C; Schueler-Furman O; Andre I; London N; Fleishman SJ; Bradley P; Qian B; Baker D
    Proteins; 2007 Dec; 69(4):758-63. PubMed ID: 17671979
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Efficient flexible backbone protein-protein docking for challenging targets.
    Marze NA; Roy Burman SS; Sheffler W; Gray JJ
    Bioinformatics; 2018 Oct; 34(20):3461-3469. PubMed ID: 29718115
    [TBL] [Abstract][Full Text] [Related]  

  • 5. A memetic algorithm enables efficient local and global all-atom protein-protein docking with backbone and side-chain flexibility.
    Varela D; Karlin V; André I
    Structure; 2022 Nov; 30(11):1550-1558.e3. PubMed ID: 36265485
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Accounting for loop flexibility during protein-protein docking.
    Bastard K; Prévost C; Zacharias M
    Proteins; 2006 Mar; 62(4):956-69. PubMed ID: 16372349
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Flexible protein-protein docking.
    Bonvin AM
    Curr Opin Struct Biol; 2006 Apr; 16(2):194-200. PubMed ID: 16488145
    [TBL] [Abstract][Full Text] [Related]  

  • 8. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
    Ravindranath PA; Forli S; Goodsell DS; Olson AJ; Sanner MF
    PLoS Comput Biol; 2015 Dec; 11(12):e1004586. PubMed ID: 26629955
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Principles of flexible protein-protein docking.
    Andrusier N; Mashiach E; Nussinov R; Wolfson HJ
    Proteins; 2008 Nov; 73(2):271-89. PubMed ID: 18655061
    [TBL] [Abstract][Full Text] [Related]  

  • 10. FiberDock: Flexible induced-fit backbone refinement in molecular docking.
    Mashiach E; Nussinov R; Wolfson HJ
    Proteins; 2010 May; 78(6):1503-19. PubMed ID: 20077569
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Conformer selection and induced fit in flexible backbone protein-protein docking using computational and NMR ensembles.
    Chaudhury S; Gray JJ
    J Mol Biol; 2008 Sep; 381(4):1068-87. PubMed ID: 18640688
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Flexible protein-protein docking based on Best-First search algorithm.
    Noy E; Goldblum A
    J Comput Chem; 2010 Jul; 31(9):1929-43. PubMed ID: 20087902
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Protein-Protein Docking with Large-Scale Backbone Flexibility Using Coarse-Grained Monte-Carlo Simulations.
    Kurcinski M; Kmiecik S; Zalewski M; Kolinski A
    Int J Mol Sci; 2021 Jul; 22(14):. PubMed ID: 34298961
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Improved flexible refinement of protein docking in CAPRI rounds 22-27.
    Shen Y
    Proteins; 2013 Dec; 81(12):2129-36. PubMed ID: 23996302
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Advances to tackle backbone flexibility in protein docking.
    Harmalkar A; Gray JJ
    Curr Opin Struct Biol; 2021 Apr; 67():178-186. PubMed ID: 33360497
    [TBL] [Abstract][Full Text] [Related]  

  • 16. A simple model of backbone flexibility improves modeling of side-chain conformational variability.
    Friedland GD; Linares AJ; Smith CA; Kortemme T
    J Mol Biol; 2008 Jul; 380(4):757-74. PubMed ID: 18547586
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Modeling loop backbone flexibility in receptor-ligand docking simulations.
    Flick J; Tristram F; Wenzel W
    J Comput Chem; 2012 Dec; 33(31):2504-15. PubMed ID: 22886372
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Rapid refinement of protein interfaces incorporating solvation: application to the docking problem.
    Jackson RM; Gabb HA; Sternberg MJ
    J Mol Biol; 1998 Feb; 276(1):265-85. PubMed ID: 9514726
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Progress in protein-protein docking: atomic resolution predictions in the CAPRI experiment using RosettaDock with an improved treatment of side-chain flexibility.
    Schueler-Furman O; Wang C; Baker D
    Proteins; 2005 Aug; 60(2):187-94. PubMed ID: 15981249
    [TBL] [Abstract][Full Text] [Related]  

  • 20. The impact of protein flexibility on protein-protein docking.
    Ehrlich LP; Nilges M; Wade RC
    Proteins; 2005 Jan; 58(1):126-33. PubMed ID: 15515181
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.