182 related articles for article (PubMed ID: 35230681)
1. Software Workflows and Infrastructures for Precision Oncology.
Osman W; Laganà A
Adv Exp Med Biol; 2022; 1361():23-35. PubMed ID: 35230681
[TBL] [Abstract][Full Text] [Related]
2. Bioinformatics workflows for clinical applications in precision oncology.
Jäger N
Semin Cancer Biol; 2022 Sep; 84():103-112. PubMed ID: 33476720
[TBL] [Abstract][Full Text] [Related]
3. Scalable Workflows and Reproducible Data Analysis for Genomics.
Strozzi F; Janssen R; Wurmus R; Crusoe MR; Githinji G; Di Tommaso P; Belhachemi D; Möller S; Smant G; de Ligt J; Prins P
Methods Mol Biol; 2019; 1910():723-745. PubMed ID: 31278683
[TBL] [Abstract][Full Text] [Related]
4. CWL-Airflow: a lightweight pipeline manager supporting Common Workflow Language.
Kotliar M; Kartashov AV; Barski A
Gigascience; 2019 Jul; 8(7):. PubMed ID: 31321430
[TBL] [Abstract][Full Text] [Related]
5. Developing reproducible bioinformatics analysis workflows for heterogeneous computing environments to support African genomics.
Baichoo S; Souilmi Y; Panji S; Botha G; Meintjes A; Hazelhurst S; Bendou H; Beste E; Mpangase PT; Souiai O; Alghali M; Yi L; O'Connor BD; Crusoe M; Armstrong D; Aron S; Joubert F; Ahmed AE; Mbiyavanga M; Heusden PV; Magosi LE; Zermeno J; Mainzer LS; Fadlelmola FM; Jongeneel CV; Mulder N
BMC Bioinformatics; 2018 Nov; 19(1):457. PubMed ID: 30486782
[TBL] [Abstract][Full Text] [Related]
6. Accumulating computational resource usage of genomic data analysis workflow to optimize cloud computing instance selection.
Ohta T; Tanjo T; Ogasawara O
Gigascience; 2019 Apr; 8(4):. PubMed ID: 31222199
[TBL] [Abstract][Full Text] [Related]
7. Building Portable and Reproducible Cancer Informatics Workflows: An RNA Sequencing Case Study.
Kaushik G; Davis-Dusenbery B
Methods Mol Biol; 2019; 1878():39-64. PubMed ID: 30378068
[TBL] [Abstract][Full Text] [Related]
8. Simplifying the development of portable, scalable, and reproducible workflows.
Piccolo SR; Ence ZE; Anderson EC; Chang JT; Bild AH
Elife; 2021 Oct; 10():. PubMed ID: 34643507
[TBL] [Abstract][Full Text] [Related]
9. Applications of the pipeline environment for visual informatics and genomics computations.
Dinov ID; Torri F; Macciardi F; Petrosyan P; Liu Z; Zamanyan A; Eggert P; Pierce J; Genco A; Knowles JA; Clark AP; Van Horn JD; Ames J; Kesselman C; Toga AW
BMC Bioinformatics; 2011 Jul; 12():304. PubMed ID: 21791102
[TBL] [Abstract][Full Text] [Related]
10. Design considerations for workflow management systems use in production genomics research and the clinic.
Ahmed AE; Allen JM; Bhat T; Burra P; Fliege CE; Hart SN; Heldenbrand JR; Hudson ME; Istanto DD; Kalmbach MT; Kapraun GD; Kendig KI; Kendzior MC; Klee EW; Mattson N; Ross CA; Sharif SM; Venkatakrishnan R; Fadlelmola FM; Mainzer LS
Sci Rep; 2021 Nov; 11(1):21680. PubMed ID: 34737383
[TBL] [Abstract][Full Text] [Related]
11. Bioinformatics for precision oncology.
Singer J; Irmisch A; Ruscheweyh HJ; Singer F; Toussaint NC; Levesque MP; Stekhoven DJ; Beerenwinkel N
Brief Bioinform; 2019 May; 20(3):778-788. PubMed ID: 29272324
[TBL] [Abstract][Full Text] [Related]
12. Operationalizing Quality Assurance for Clinical Illumina Somatic Next-Generation Sequencing Pipelines.
Bridgers J; Alexander K; Karsan A
J Mol Diagn; 2024 Feb; 26(2):96-105. PubMed ID: 38086510
[TBL] [Abstract][Full Text] [Related]
13. Genomics and bioinformatics as pillars of precision medicine in oncology.
Canzoneri R; Lacunza E; Abba MC
Medicina (B Aires); 2019; 79(Spec 6/1):587-592. PubMed ID: 31864231
[TBL] [Abstract][Full Text] [Related]
14. Biowep: a workflow enactment portal for bioinformatics applications.
Romano P; Bartocci E; Bertolini G; De Paoli F; Marra D; Mauri G; Merelli E; Milanesi L
BMC Bioinformatics; 2007 Mar; 8 Suppl 1(Suppl 1):S19. PubMed ID: 17430563
[TBL] [Abstract][Full Text] [Related]
15. The Architecture of a Precision Oncology Platform.
Laganà A
Adv Exp Med Biol; 2022; 1361():1-22. PubMed ID: 35230680
[TBL] [Abstract][Full Text] [Related]
16. Workflows for microarray data processing in the Kepler environment.
Stropp T; McPhillips T; Ludäscher B; Bieda M
BMC Bioinformatics; 2012 May; 13():102. PubMed ID: 22594911
[TBL] [Abstract][Full Text] [Related]
17. Raw transcriptomics data to gene specific SSRs: a validated free bioinformatics workflow for biologists.
Naranpanawa DNU; Chandrasekara CHWMRB; Bandaranayake PCG; Bandaranayake AU
Sci Rep; 2020 Oct; 10(1):18236. PubMed ID: 33106560
[TBL] [Abstract][Full Text] [Related]
18. Reproducible bioinformatics project: a community for reproducible bioinformatics analysis pipelines.
Kulkarni N; Alessandrì L; Panero R; Arigoni M; Olivero M; Ferrero G; Cordero F; Beccuti M; Calogero RA
BMC Bioinformatics; 2018 Oct; 19(Suppl 10):349. PubMed ID: 30367595
[TBL] [Abstract][Full Text] [Related]
19. A Genomic Analysis Workflow for Colorectal Cancer Precision Oncology.
Corti G; Bartolini A; Crisafulli G; Novara L; Rospo G; Montone M; Negrino C; Mussolin B; Buscarino M; Isella C; Barault L; Siravegna G; Siena S; Marsoni S; Di Nicolantonio F; Medico E; Bardelli A
Clin Colorectal Cancer; 2019 Jun; 18(2):91-101.e3. PubMed ID: 30981604
[TBL] [Abstract][Full Text] [Related]
20. Reproducible, scalable, and shareable analysis pipelines with bioinformatics workflow managers.
Wratten L; Wilm A; Göke J
Nat Methods; 2021 Oct; 18(10):1161-1168. PubMed ID: 34556866
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]