169 related articles for article (PubMed ID: 35255937)
1. StrainGE: a toolkit to track and characterize low-abundance strains in complex microbial communities.
van Dijk LR; Walker BJ; Straub TJ; Worby CJ; Grote A; Schreiber HL; Anyansi C; Pickering AJ; Hultgren SJ; Manson AL; Abeel T; Earl AM
Genome Biol; 2022 Mar; 23(1):74. PubMed ID: 35255937
[TBL] [Abstract][Full Text] [Related]
2. What Is Metagenomics Teaching Us, and What Is Missed?
New FN; Brito IL
Annu Rev Microbiol; 2020 Sep; 74():117-135. PubMed ID: 32603623
[TBL] [Abstract][Full Text] [Related]
3. High-resolution strain-level microbiome composition analysis from short reads.
Liao H; Ji Y; Sun Y
Microbiome; 2023 Aug; 11(1):183. PubMed ID: 37587527
[TBL] [Abstract][Full Text] [Related]
4. Strain profiling and epidemiology of bacterial species from metagenomic sequencing.
Albanese D; Donati C
Nat Commun; 2017 Dec; 8(1):2260. PubMed ID: 29273717
[TBL] [Abstract][Full Text] [Related]
5. Metagenomic assembly through the lens of validation: recent advances in assessing and improving the quality of genomes assembled from metagenomes.
Olson ND; Treangen TJ; Hill CM; Cepeda-Espinoza V; Ghurye J; Koren S; Pop M
Brief Bioinform; 2019 Jul; 20(4):1140-1150. PubMed ID: 28968737
[TBL] [Abstract][Full Text] [Related]
6. Evaluating
Vosloo S; Huo L; Anderson CL; Dai Z; Sevillano M; Pinto A
Microbiol Spectr; 2021 Dec; 9(3):e0143421. PubMed ID: 34730411
[TBL] [Abstract][Full Text] [Related]
7. MetaMLST: multi-locus strain-level bacterial typing from metagenomic samples.
Zolfo M; Tett A; Jousson O; Donati C; Segata N
Nucleic Acids Res; 2017 Jan; 45(2):e7. PubMed ID: 27651451
[TBL] [Abstract][Full Text] [Related]
8. ConStrains identifies microbial strains in metagenomic datasets.
Luo C; Knight R; Siljander H; Knip M; Xavier RJ; Gevers D
Nat Biotechnol; 2015 Oct; 33(10):1045-52. PubMed ID: 26344404
[TBL] [Abstract][Full Text] [Related]
9. Intestinal microbiota domination under extreme selective pressures characterized by metagenomic read cloud sequencing and assembly.
Kang JB; Siranosian BA; Moss EL; Banaei N; Andermann TM; Bhatt AS
BMC Bioinformatics; 2019 Dec; 20(Suppl 16):585. PubMed ID: 31787070
[TBL] [Abstract][Full Text] [Related]
10. Microbial Tracking-2, a metagenomics analysis of bacteria and fungi onboard the International Space Station.
Urbaniak C; Morrison MD; Thissen JB; Karouia F; Smith DJ; Mehta S; Jaing C; Venkateswaran K
Microbiome; 2022 Jun; 10(1):100. PubMed ID: 35765106
[TBL] [Abstract][Full Text] [Related]
11. MinION™ nanopore sequencing of environmental metagenomes: a synthetic approach.
Brown BL; Watson M; Minot SS; Rivera MC; Franklin RB
Gigascience; 2017 Mar; 6(3):1-10. PubMed ID: 28327976
[TBL] [Abstract][Full Text] [Related]
12. Species classifier choice is a key consideration when analysing low-complexity food microbiome data.
Walsh AM; Crispie F; O'Sullivan O; Finnegan L; Claesson MJ; Cotter PD
Microbiome; 2018 Mar; 6(1):50. PubMed ID: 29554948
[TBL] [Abstract][Full Text] [Related]
13. Metagenomic binning and association of plasmids with bacterial host genomes using DNA methylation.
Beaulaurier J; Zhu S; Deikus G; Mogno I; Zhang XS; Davis-Richardson A; Canepa R; Triplett EW; Faith JJ; Sebra R; Schadt EE; Fang G
Nat Biotechnol; 2018 Jan; 36(1):61-69. PubMed ID: 29227468
[TBL] [Abstract][Full Text] [Related]
14. Computational analyses of bacterial strains from shotgun reads.
Ventolero MF; Wang S; Hu H; Li X
Brief Bioinform; 2022 Mar; 23(2):. PubMed ID: 35136954
[TBL] [Abstract][Full Text] [Related]
15. Functional dynamics of bacterial species in the mouse gut microbiome revealed by metagenomic and metatranscriptomic analyses.
Chung YW; Gwak HJ; Moon S; Rho M; Ryu JH
PLoS One; 2020; 15(1):e0227886. PubMed ID: 31978162
[TBL] [Abstract][Full Text] [Related]
16. Strain Structure and Dynamics Revealed by Targeted Deep Sequencing of the Honey Bee Gut Microbiome.
Bobay LM; Wissel EF; Raymann K
mSphere; 2020 Aug; 5(4):. PubMed ID: 32848005
[TBL] [Abstract][Full Text] [Related]
17. Growth dynamics of gut microbiota in health and disease inferred from single metagenomic samples.
Korem T; Zeevi D; Suez J; Weinberger A; Avnit-Sagi T; Pompan-Lotan M; Matot E; Jona G; Harmelin A; Cohen N; Sirota-Madi A; Thaiss CA; Pevsner-Fischer M; Sorek R; Xavier R; Elinav E; Segal E
Science; 2015 Sep; 349(6252):1101-1106. PubMed ID: 26229116
[TBL] [Abstract][Full Text] [Related]
18. Longitudinal linked-read sequencing reveals ecological and evolutionary responses of a human gut microbiome during antibiotic treatment.
Roodgar M; Good BH; Garud NR; Martis S; Avula M; Zhou W; Lancaster SM; Lee H; Babveyh A; Nesamoney S; Pollard KS; Snyder MP
Genome Res; 2021 Aug; 31(8):1433-1446. PubMed ID: 34301627
[TBL] [Abstract][Full Text] [Related]
19. Profiling microbial strains in urban environments using metagenomic sequencing data.
Zolfo M; Asnicar F; Manghi P; Pasolli E; Tett A; Segata N
Biol Direct; 2018 May; 13(1):9. PubMed ID: 29743119
[TBL] [Abstract][Full Text] [Related]
20. Using 16S rRNA gene as marker to detect unknown bacteria in microbial communities.
Tran Q; Pham DT; Phan V
BMC Bioinformatics; 2017 Dec; 18(Suppl 14):499. PubMed ID: 29297282
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]