These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

134 related articles for article (PubMed ID: 35259087)

  • 1. Software testing in microbial bioinformatics: a call to action.
    van der Putten BCL; Mendes CI; Talbot BM; de Korne-Elenbaas J; Mamede R; Vila-Cerqueira P; Coelho LP; Gulvik CA; Katz LS; The Asm Ngs Hackathon Participants
    Microb Genom; 2022 Mar; 8(3):. PubMed ID: 35259087
    [TBL] [Abstract][Full Text] [Related]  

  • 2. seqQscorer: automated quality control of next-generation sequencing data using machine learning.
    Albrecht S; Sprang M; Andrade-Navarro MA; Fontaine JF
    Genome Biol; 2021 Mar; 22(1):75. PubMed ID: 33673854
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Standards and Guidelines for Validating Next-Generation Sequencing Bioinformatics Pipelines: A Joint Recommendation of the Association for Molecular Pathology and the College of American Pathologists.
    Roy S; Coldren C; Karunamurthy A; Kip NS; Klee EW; Lincoln SE; Leon A; Pullambhatla M; Temple-Smolkin RL; Voelkerding KV; Wang C; Carter AB
    J Mol Diagn; 2018 Jan; 20(1):4-27. PubMed ID: 29154853
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Using R and Bioconductor in Clinical Genomics and Transcriptomics.
    Sepulveda JL
    J Mol Diagn; 2020 Jan; 22(1):3-20. PubMed ID: 31605800
    [TBL] [Abstract][Full Text] [Related]  

  • 5. NGS++: a library for rapid prototyping of epigenomics software tools.
    Nordell Markovits A; Joly Beauparlant C; Toupin D; Wang S; Droit A; Gevry N
    Bioinformatics; 2013 Aug; 29(15):1893-4. PubMed ID: 23736531
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Pipeliner: software to evaluate the performance of bioinformatics pipelines for next-generation resequencing.
    Nevado B; Perez-Enciso M
    Mol Ecol Resour; 2015 Jan; 15(1):99-106. PubMed ID: 24890372
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Review of alignment and SNP calling algorithms for next-generation sequencing data.
    Mielczarek M; Szyda J
    J Appl Genet; 2016 Feb; 57(1):71-9. PubMed ID: 26055432
    [TBL] [Abstract][Full Text] [Related]  

  • 8. College of American Pathologists' laboratory standards for next-generation sequencing clinical tests.
    Aziz N; Zhao Q; Bry L; Driscoll DK; Funke B; Gibson JS; Grody WW; Hegde MR; Hoeltge GA; Leonard DG; Merker JD; Nagarajan R; Palicki LA; Robetorye RS; Schrijver I; Weck KE; Voelkerding KV
    Arch Pathol Lab Med; 2015 Apr; 139(4):481-93. PubMed ID: 25152313
    [TBL] [Abstract][Full Text] [Related]  

  • 9. A large-scale analysis of bioinformatics code on GitHub.
    Russell PH; Johnson RL; Ananthan S; Harnke B; Carlson NE
    PLoS One; 2018; 13(10):e0205898. PubMed ID: 30379882
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Principles and Validation of Bioinformatics Pipeline for Cancer Next-Generation Sequencing.
    Roy S
    Clin Lab Med; 2022 Sep; 42(3):409-421. PubMed ID: 36150820
    [TBL] [Abstract][Full Text] [Related]  

  • 11. VarBen: Generating in Silico Reference Data Sets for Clinical Next-Generation Sequencing Bioinformatics Pipeline Evaluation.
    Li Z; Fang S; Zhang R; Yu L; Zhang J; Bu D; Sun L; Zhao Y; Li J
    J Mol Diagn; 2021 Mar; 23(3):285-299. PubMed ID: 33346148
    [TBL] [Abstract][Full Text] [Related]  

  • 12. NEAT: a framework for building fully automated NGS pipelines and analyses.
    Schorderet P
    BMC Bioinformatics; 2016 Feb; 17():53. PubMed ID: 26830846
    [TBL] [Abstract][Full Text] [Related]  

  • 13. A bioinformatics pipeline integrating predictive metagenomics profiling for the analysis of 16S rDNA/rRNA sequencing data originated from foods.
    Mataragas M; Alessandria V; Ferrocino I; Rantsiou K; Cocolin L
    Food Microbiol; 2018 Dec; 76():279-286. PubMed ID: 30166151
    [TBL] [Abstract][Full Text] [Related]  

  • 14. BFC: correcting Illumina sequencing errors.
    Li H
    Bioinformatics; 2015 Sep; 31(17):2885-7. PubMed ID: 25953801
    [TBL] [Abstract][Full Text] [Related]  

  • 15. SNooPer: a machine learning-based method for somatic variant identification from low-pass next-generation sequencing.
    Spinella JF; Mehanna P; Vidal R; Saillour V; Cassart P; Richer C; Ouimet M; Healy J; Sinnett D
    BMC Genomics; 2016 Nov; 17(1):912. PubMed ID: 27842494
    [TBL] [Abstract][Full Text] [Related]  

  • 16. APBioNet's annual International Conference on Bioinformatics (InCoB) returns to India in 2018.
    Ahmad S; Gromiha MM; Raghava GPS; Schönbach C; Ranganathan S
    BMC Genomics; 2019 Apr; 19(Suppl 9):266. PubMed ID: 30999857
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Novel bioinformatics quality control metric for next-generation sequencing experiments in the clinical context.
    Ivanov M; Ivanov M; Kasianov A; Rozhavskaya E; Musienko S; Baranova A; Mileyko V
    Nucleic Acids Res; 2019 Dec; 47(21):e135. PubMed ID: 31511888
    [TBL] [Abstract][Full Text] [Related]  

  • 18. mQC: A post-mapping data exploration tool for ribosome profiling.
    Verbruggen S; Menschaert G
    Comput Methods Programs Biomed; 2019 Nov; 181():104806. PubMed ID: 30401579
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Assembling and Validating Bioinformatic Pipelines for Next-Generation Sequencing Clinical Assays.
    SoRelle JA; Wachsmann M; Cantarel BL
    Arch Pathol Lab Med; 2020 Sep; 144(9):1118-1130. PubMed ID: 32045276
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Benchmarking the Human Leukocyte Antigen Typing Performance of Three Assays and Seven Next-Generation Sequencing-Based Algorithms.
    Liu P; Yao M; Gong Y; Song Y; Chen Y; Ye Y; Liu X; Li F; Dong H; Meng R; Chen H; Zheng A
    Front Immunol; 2021; 12():652258. PubMed ID: 33868290
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 7.