These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.
159 related articles for article (PubMed ID: 35272347)
1. A survey on the algorithm and development of multiple sequence alignment. Zhang Y; Zhang Q; Zhou J; Zou Q Brief Bioinform; 2022 May; 23(3):. PubMed ID: 35272347 [TBL] [Abstract][Full Text] [Related]
2. ProgSIO-MSA: Progressive-based single iterative optimization framework for multiple sequence alignment using an effective scoring system. Bankapur S; Patil N J Bioinform Comput Biol; 2020 Apr; 18(2):2050005. PubMed ID: 32372711 [TBL] [Abstract][Full Text] [Related]
3. Multiple protein sequence alignment with MSAProbs. Liu Y; Schmidt B Methods Mol Biol; 2014; 1079():211-8. PubMed ID: 24170405 [TBL] [Abstract][Full Text] [Related]
4. Class of multiple sequence alignment algorithm affects genomic analysis. Blackburne BP; Whelan S Mol Biol Evol; 2013 Mar; 30(3):642-53. PubMed ID: 23144040 [TBL] [Abstract][Full Text] [Related]
5. A Novel Approach to Multiple Sequence Alignment Using Multiobjective Evolutionary Algorithm Based on Decomposition. Zhu H; He Z; Jia Y IEEE J Biomed Health Inform; 2016 Mar; 20(2):717-27. PubMed ID: 25700475 [TBL] [Abstract][Full Text] [Related]
6. Graph representation learning in bioinformatics: trends, methods and applications. Yi HC; You ZH; Huang DS; Kwoh CK Brief Bioinform; 2022 Jan; 23(1):. PubMed ID: 34471921 [TBL] [Abstract][Full Text] [Related]
7. Multiple sequence alignment using multi-objective based bacterial foraging optimization algorithm. Rani RR; Ramyachitra D Biosystems; 2016 Dec; 150():177-189. PubMed ID: 27784624 [TBL] [Abstract][Full Text] [Related]
8. An alignment-free heuristic for fast sequence comparisons with applications to phylogeny reconstruction. Chockalingam SP; Pannu J; Hooshmand S; Thankachan SV; Aluru S BMC Bioinformatics; 2020 Nov; 21(Suppl 6):404. PubMed ID: 33203364 [TBL] [Abstract][Full Text] [Related]
9. An approach for COFFEE objective function to global DNA multiple sequence alignment. Amorim AR; Neves LA; ValĂȘncio CR; Roberto GF; Zafalon GFD Comput Biol Chem; 2018 Aug; 75():39-44. PubMed ID: 29738913 [TBL] [Abstract][Full Text] [Related]
10. Novel hybrid genetic algorithm for progressive multiple sequence alignment. Afridi MI Int J Bioinform Res Appl; 2013; 9(6):614-24. PubMed ID: 24084242 [TBL] [Abstract][Full Text] [Related]
11. Protein multiple sequence alignment benchmarking through secondary structure prediction. Le Q; Sievers F; Higgins DG Bioinformatics; 2017 May; 33(9):1331-1337. PubMed ID: 28093407 [TBL] [Abstract][Full Text] [Related]
12. Multiple Sequence Alignment Computation Using the T-Coffee Regressive Algorithm Implementation. Garriga E; Di Tommaso P; Magis C; Erb I; Mansouri L; Baltzis A; Floden E; Notredame C Methods Mol Biol; 2021; 2231():89-97. PubMed ID: 33289888 [TBL] [Abstract][Full Text] [Related]
13. PicXAA: greedy probabilistic construction of maximum expected accuracy alignment of multiple sequences. Sahraeian SM; Yoon BJ Nucleic Acids Res; 2010 Aug; 38(15):4917-28. PubMed ID: 20413579 [TBL] [Abstract][Full Text] [Related]
14. MSACompro: improving multiple protein sequence alignment by predicted structural features. Deng X; Cheng J Methods Mol Biol; 2014; 1079():273-83. PubMed ID: 24170409 [TBL] [Abstract][Full Text] [Related]
15. CMSA: a heterogeneous CPU/GPU computing system for multiple similar RNA/DNA sequence alignment. Chen X; Wang C; Tang S; Yu C; Zou Q BMC Bioinformatics; 2017 Jun; 18(1):315. PubMed ID: 28646874 [TBL] [Abstract][Full Text] [Related]
16. Predicting the accuracy of multiple sequence alignment algorithms by using computational intelligent techniques. Ortuño FM; Valenzuela O; Pomares H; Rojas F; Florido JP; Urquiza JM; Rojas I Nucleic Acids Res; 2013 Jan; 41(1):e26. PubMed ID: 23066102 [TBL] [Abstract][Full Text] [Related]
17. Multiple Sequence Alignment with Hidden Markov Models Learned by Random Drift Particle Swarm Optimization. Sun J; Palade V; Wu X; Fang W IEEE/ACM Trans Comput Biol Bioinform; 2014; 11(1):243-57. PubMed ID: 26355522 [TBL] [Abstract][Full Text] [Related]
18. A benchmark study of sequence alignment methods for protein clustering. Wang Y; Wu H; Cai Y BMC Bioinformatics; 2018 Dec; 19(Suppl 19):529. PubMed ID: 30598070 [TBL] [Abstract][Full Text] [Related]
19. MSACompro: protein multiple sequence alignment using predicted secondary structure, solvent accessibility, and residue-residue contacts. Deng X; Cheng J BMC Bioinformatics; 2011 Dec; 12():472. PubMed ID: 22168237 [TBL] [Abstract][Full Text] [Related]
20. Improvement in accuracy of multiple sequence alignment using novel group-to-group sequence alignment algorithm with piecewise linear gap cost. Yamada S; Gotoh O; Yamana H BMC Bioinformatics; 2006 Dec; 7():524. PubMed ID: 17137519 [TBL] [Abstract][Full Text] [Related] [Next] [New Search]