121 related articles for article (PubMed ID: 35286768)
1. ProSight Annotator: Complete control and customization of protein entries in UniProt XML files.
Greer JB; Early BP; Durbin KR; Patrie SM; Thomas PM; Kelleher NL; LeDuc RD; Fellers RT
Proteomics; 2022 Jun; 22(11-12):e2100209. PubMed ID: 35286768
[TBL] [Abstract][Full Text] [Related]
2. Spritz: A Proteogenomic Database Engine.
Cesnik AJ; Miller RM; Ibrahim K; Lu L; Millikin RJ; Shortreed MR; Frey BL; Smith LM
J Proteome Res; 2021 Apr; 20(4):1826-1834. PubMed ID: 32967423
[TBL] [Abstract][Full Text] [Related]
3. Improving Proteoform Identifications in Complex Systems Through Integration of Bottom-Up and Top-Down Data.
Schaffer LV; Millikin RJ; Shortreed MR; Scalf M; Smith LM
J Proteome Res; 2020 Aug; 19(8):3510-3517. PubMed ID: 32584579
[TBL] [Abstract][Full Text] [Related]
4. Characterization of Proteoform Post-Translational Modifications by Top-Down and Bottom-Up Mass Spectrometry in Conjunction with Annotations.
Chen W; Ding Z; Zang Y; Liu X
J Proteome Res; 2023 Oct; 22(10):3178-3189. PubMed ID: 37728997
[TBL] [Abstract][Full Text] [Related]
5. ProSight Lite: graphical software to analyze top-down mass spectrometry data.
Fellers RT; Greer JB; Early BP; Yu X; LeDuc RD; Kelleher NL; Thomas PM
Proteomics; 2015 Apr; 15(7):1235-8. PubMed ID: 25828799
[TBL] [Abstract][Full Text] [Related]
6. Characterization of Proteoforms with Unknown Post-translational Modifications Using the MIScore.
Kou Q; Zhu B; Wu S; Ansong C; Tolić N; Paša-Tolić L; Liu X
J Proteome Res; 2016 Aug; 15(8):2422-32. PubMed ID: 27291504
[TBL] [Abstract][Full Text] [Related]
7. Constructing Human Proteoform Families Using Intact-Mass and Top-Down Proteomics with a Multi-Protease Global Post-Translational Modification Discovery Database.
Dai Y; Buxton KE; Schaffer LV; Miller RM; Millikin RJ; Scalf M; Frey BL; Shortreed MR; Smith LM
J Proteome Res; 2019 Oct; 18(10):3671-3680. PubMed ID: 31479276
[TBL] [Abstract][Full Text] [Related]
8. The Universal Protein Resource (UniProt).
Bairoch A; Apweiler R; Wu CH; Barker WC; Boeckmann B; Ferro S; Gasteiger E; Huang H; Lopez R; Magrane M; Martin MJ; Natale DA; O'Donovan C; Redaschi N; Yeh LS
Nucleic Acids Res; 2005 Jan; 33(Database issue):D154-9. PubMed ID: 15608167
[TBL] [Abstract][Full Text] [Related]
9. Characterization of proteoform post-translational modifications by top-down and bottom-up mass spectrometry in conjunction with UniProt annotations.
Chen W; Ding Z; Zang Y; Liu X
bioRxiv; 2023 Apr; ():. PubMed ID: 37066296
[TBL] [Abstract][Full Text] [Related]
10. UniProt: the Universal Protein knowledgebase.
Apweiler R; Bairoch A; Wu CH; Barker WC; Boeckmann B; Ferro S; Gasteiger E; Huang H; Lopez R; Magrane M; Martin MJ; Natale DA; O'Donovan C; Redaschi N; Yeh LS
Nucleic Acids Res; 2004 Jan; 32(Database issue):D115-9. PubMed ID: 14681372
[TBL] [Abstract][Full Text] [Related]
11. Bioinformatics Analysis of Top-Down Mass Spectrometry Data with ProSight Lite.
DeHart CJ; Fellers RT; Fornelli L; Kelleher NL; Thomas PM
Methods Mol Biol; 2017; 1558():381-394. PubMed ID: 28150248
[TBL] [Abstract][Full Text] [Related]
12. ProteoSushi: A Software Tool to Biologically Annotate and Quantify Modification-Specific, Peptide-Centric Proteomics Data Sets.
Seymour RW; van der Post S; Mooradian AD; Held JM
J Proteome Res; 2021 Jul; 20(7):3621-3628. PubMed ID: 34056901
[TBL] [Abstract][Full Text] [Related]
13. The Universal Protein Resource (UniProt) 2009.
UniProt Consortium
Nucleic Acids Res; 2009 Jan; 37(Database issue):D169-74. PubMed ID: 18836194
[TBL] [Abstract][Full Text] [Related]
14. TopPIC: a software tool for top-down mass spectrometry-based proteoform identification and characterization.
Kou Q; Xun L; Liu X
Bioinformatics; 2016 Nov; 32(22):3495-3497. PubMed ID: 27423895
[TBL] [Abstract][Full Text] [Related]
15. The Human Proteoform Atlas: a FAIR community resource for experimentally derived proteoforms.
Hollas MAR; Robey MT; Fellers RT; LeDuc RD; Thomas PM; Kelleher NL
Nucleic Acids Res; 2022 Jan; 50(D1):D526-D533. PubMed ID: 34986596
[TBL] [Abstract][Full Text] [Related]
16. Proteoform Analysis and Construction of Proteoform Families in Proteoform Suite.
Schaffer LV; Shortreed MR; Smith LM
Methods Mol Biol; 2022; 2500():67-81. PubMed ID: 35657588
[TBL] [Abstract][Full Text] [Related]
17. Software eyes for protein post-translational modifications.
Na S; Paek E
Mass Spectrom Rev; 2015; 34(2):133-47. PubMed ID: 24889695
[TBL] [Abstract][Full Text] [Related]
18. ProSight PTM: an integrated environment for protein identification and characterization by top-down mass spectrometry.
LeDuc RD; Taylor GK; Kim YB; Januszyk TE; Bynum LH; Sola JV; Garavelli JS; Kelleher NL
Nucleic Acids Res; 2004 Jul; 32(Web Server issue):W340-5. PubMed ID: 15215407
[TBL] [Abstract][Full Text] [Related]
19. MASCOT HTML and XML parser: an implementation of a novel object model for protein identification data.
Yang CG; Granite SJ; Van Eyk JE; Winslow RL
Proteomics; 2006 Nov; 6(21):5688-93. PubMed ID: 17006878
[TBL] [Abstract][Full Text] [Related]
20. The PRoteomics IDEntification (PRIDE) Converter 2 framework: an improved suite of tools to facilitate data submission to the PRIDE database and the ProteomeXchange consortium.
Côté RG; Griss J; Dianes JA; Wang R; Wright JC; van den Toorn HW; van Breukelen B; Heck AJ; Hulstaert N; Martens L; Reisinger F; Csordas A; Ovelleiro D; Perez-Rivevol Y; Barsnes H; Hermjakob H; Vizcaíno JA
Mol Cell Proteomics; 2012 Dec; 11(12):1682-9. PubMed ID: 22949509
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
