BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

165 related articles for article (PubMed ID: 35298641)

  • 1. Gattaca: Base-Pair Resolution Mutation Tracking for Somatic Evolution Studies using Agent-based Models.
    Schenck RO; Brosula G; West J; Leedham S; Shibata D; Anderson ARA
    Mol Biol Evol; 2022 Apr; 39(4):. PubMed ID: 35298641
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Genetic Determinants of Somatic Selection of Mutational Processes in 3,566 Human Cancers.
    Guo J; Zhou Y; Xu C; Chen Q; Sztupinszki Z; Börcsök J; Xu C; Ye F; Tang W; Kang J; Yang L; Zhong J; Zhong T; Hu T; Yu R; Szallasi Z; Deng X; Li Q
    Cancer Res; 2021 Aug; 81(16):4205-4217. PubMed ID: 34215622
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Somatic mutation distributions in cancer genomes vary with three-dimensional chromatin structure.
    Akdemir KC; Le VT; Kim JM; Killcoyne S; King DA; Lin YP; Tian Y; Inoue A; Amin SB; Robinson FS; Nimmakayalu M; Herrera RE; Lynn EJ; Chan K; Seth S; Klimczak LJ; Gerstung M; Gordenin DA; O'Brien J; Li L; Deribe YL; Verhaak RG; Campbell PJ; Fitzgerald R; Morrison AJ; Dixon JR; Andrew Futreal P
    Nat Genet; 2020 Nov; 52(11):1178-1188. PubMed ID: 33020667
    [TBL] [Abstract][Full Text] [Related]  

  • 4. A compartment size-dependent selective threshold limits mutation accumulation in hierarchical tissues.
    Grajzel D; Derényi I; Szöllősi GJ
    Proc Natl Acad Sci U S A; 2020 Jan; 117(3):1606-1611. PubMed ID: 31907322
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Mutalisk: a web-based somatic MUTation AnaLyIS toolKit for genomic, transcriptional and epigenomic signatures.
    Lee J; Lee AJ; Lee JK; Park J; Kwon Y; Park S; Chun H; Ju YS; Hong D
    Nucleic Acids Res; 2018 Jul; 46(W1):W102-W108. PubMed ID: 29790943
    [TBL] [Abstract][Full Text] [Related]  

  • 6. SuperFreq: Integrated mutation detection and clonal tracking in cancer.
    Flensburg C; Sargeant T; Oshlack A; Majewski IJ
    PLoS Comput Biol; 2020 Feb; 16(2):e1007603. PubMed ID: 32053599
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Evolution of the cancer genome.
    Yates LR; Campbell PJ
    Nat Rev Genet; 2012 Nov; 13(11):795-806. PubMed ID: 23044827
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Mutational signatures: the patterns of somatic mutations hidden in cancer genomes.
    Alexandrov LB; Stratton MR
    Curr Opin Genet Dev; 2014 Feb; 24(100):52-60. PubMed ID: 24657537
    [TBL] [Abstract][Full Text] [Related]  

  • 9. Estimation of rearrangement phylogeny for cancer genomes.
    Greenman CD; Pleasance ED; Newman S; Yang F; Fu B; Nik-Zainal S; Jones D; Lau KW; Carter N; Edwards PA; Futreal PA; Stratton MR; Campbell PJ
    Genome Res; 2012 Feb; 22(2):346-61. PubMed ID: 21994251
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Understanding mutagenesis through delineation of mutational signatures in human cancer.
    Petljak M; Alexandrov LB
    Carcinogenesis; 2016 Jun; 37(6):531-40. PubMed ID: 27207657
    [TBL] [Abstract][Full Text] [Related]  

  • 11. Exploring the Link between the Germline and Somatic Genome in Cancer.
    Geeleher P; Huang RS
    Cancer Discov; 2017 Apr; 7(4):354-355. PubMed ID: 28373166
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Somatic mutation in cancer and normal cells.
    Martincorena I; Campbell PJ
    Science; 2015 Sep; 349(6255):1483-9. PubMed ID: 26404825
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Shifting patterns of genomic variation in the somatic evolution of papillary thyroid carcinoma.
    Rubinstein JC; Brown TC; Christison-Lagay ER; Zhang Y; Kunstman JW; Juhlin CC; Nelson-Williams C; Goh G; Quinn CE; Callender GG; Udelsman R; Lifton RP; Korah R; Carling T
    BMC Cancer; 2016 Aug; 16():646. PubMed ID: 27538953
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Order Matters: The Order of Somatic Mutations Influences Cancer Evolution.
    Kent DG; Green AR
    Cold Spring Harb Perspect Med; 2017 Apr; 7(4):. PubMed ID: 28096247
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Cancer heterogeneity: converting a limitation into a source of biologic information.
    Rübben A; Araujo A
    J Transl Med; 2017 Sep; 15(1):190. PubMed ID: 28886708
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Deciphering signatures of mutational processes operative in human cancer.
    Alexandrov LB; Nik-Zainal S; Wedge DC; Campbell PJ; Stratton MR
    Cell Rep; 2013 Jan; 3(1):246-59. PubMed ID: 23318258
    [TBL] [Abstract][Full Text] [Related]  

  • 17. SubClonal Hierarchy Inference from Somatic Mutations: Automatic Reconstruction of Cancer Evolutionary Trees from Multi-region Next Generation Sequencing.
    Niknafs N; Beleva-Guthrie V; Naiman DQ; Karchin R
    PLoS Comput Biol; 2015 Oct; 11(10):e1004416. PubMed ID: 26436540
    [TBL] [Abstract][Full Text] [Related]  

  • 18. A Gene Gravity Model for the Evolution of Cancer Genomes: A Study of 3,000 Cancer Genomes across 9 Cancer Types.
    Cheng F; Liu C; Lin CC; Zhao J; Jia P; Li WH; Zhao Z
    PLoS Comput Biol; 2015 Sep; 11(9):e1004497. PubMed ID: 26352260
    [TBL] [Abstract][Full Text] [Related]  

  • 19. Age-related somatic mutations in the cancer genome.
    Milholland B; Auton A; Suh Y; Vijg J
    Oncotarget; 2015 Sep; 6(28):24627-35. PubMed ID: 26384365
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Ensemble-Based Somatic Mutation Calling in Cancer Genomes.
    Huang W; Guo YA; Chang MM; Skanderup AJ
    Methods Mol Biol; 2020; 2120():37-46. PubMed ID: 32124310
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.