289 related articles for article (PubMed ID: 35312477)
1. Ligand binding remodels protein side-chain conformational heterogeneity.
Wankowicz SA; de Oliveira SH; Hogan DW; van den Bedem H; Fraser JS
Elife; 2022 Mar; 11():. PubMed ID: 35312477
[TBL] [Abstract][Full Text] [Related]
2. How different are structurally flexible and rigid binding sites? Sequence and structural features discriminating proteins that do and do not undergo conformational change upon ligand binding.
Gunasekaran K; Nussinov R
J Mol Biol; 2007 Jan; 365(1):257-73. PubMed ID: 17059826
[TBL] [Abstract][Full Text] [Related]
3. Side-chain rotamer changes upon ligand binding: common, crucial, correlate with entropy and rearrange hydrogen bonding.
Gaudreault F; Chartier M; Najmanovich R
Bioinformatics; 2012 Sep; 28(18):i423-i430. PubMed ID: 22962462
[TBL] [Abstract][Full Text] [Related]
4. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
Foffi G; Pastore A; Piazza F; Temussi PA
Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
[TBL] [Abstract][Full Text] [Related]
5. Inherent versus induced protein flexibility: Comparisons within and between apo and holo structures.
Clark JJ; Benson ML; Smith RD; Carlson HA
PLoS Comput Biol; 2019 Jan; 15(1):e1006705. PubMed ID: 30699115
[TBL] [Abstract][Full Text] [Related]
6. Evidence of conformational selection driving the formation of ligand binding sites in protein-protein interfaces.
Bohnuud T; Kozakov D; Vajda S
PLoS Comput Biol; 2014 Oct; 10(10):e1003872. PubMed ID: 25275445
[TBL] [Abstract][Full Text] [Related]
7. Flexible CDOCKER: Hybrid Searching Algorithm and Scoring Function with Side Chain Conformational Entropy.
Wu Y; Brooks CL
J Chem Inf Model; 2021 Nov; 61(11):5535-5549. PubMed ID: 34704754
[TBL] [Abstract][Full Text] [Related]
8. AutoDockFR: Advances in Protein-Ligand Docking with Explicitly Specified Binding Site Flexibility.
Ravindranath PA; Forli S; Goodsell DS; Olson AJ; Sanner MF
PLoS Comput Biol; 2015 Dec; 11(12):e1004586. PubMed ID: 26629955
[TBL] [Abstract][Full Text] [Related]
9. Are induced fit protein conformational changes caused by ligand-binding predictable? A molecular dynamics investigation.
Gao C; Desaphy J; Vieth M
J Comput Chem; 2017 Jun; 38(15):1229-1237. PubMed ID: 28419481
[TBL] [Abstract][Full Text] [Related]
10. Side-chain flexibility in proteins upon ligand binding.
Najmanovich R; Kuttner J; Sobolev V; Edelman M
Proteins; 2000 May; 39(3):261-8. PubMed ID: 10737948
[TBL] [Abstract][Full Text] [Related]
11. Conformational and dynamics changes induced by bile acids binding to chicken liver bile acid binding protein.
Eberini I; Guerini Rocco A; Ientile AR; Baptista AM; Gianazza E; Tomaselli S; Molinari H; Ragona L
Proteins; 2008 Jun; 71(4):1889-98. PubMed ID: 18175325
[TBL] [Abstract][Full Text] [Related]
12. Protein flexibility and conformational entropy in ligand design targeting the carbohydrate recognition domain of galectin-3.
Diehl C; Engström O; Delaine T; Håkansson M; Genheden S; Modig K; Leffler H; Ryde U; Nilsson UJ; Akke M
J Am Chem Soc; 2010 Oct; 132(41):14577-89. PubMed ID: 20873837
[TBL] [Abstract][Full Text] [Related]
13. The relationship between the flexibility of proteins and their conformational states on forming protein-protein complexes with an application to protein-protein docking.
Smith GR; Sternberg MJ; Bates PA
J Mol Biol; 2005 Apr; 347(5):1077-101. PubMed ID: 15784265
[TBL] [Abstract][Full Text] [Related]
14. NMR studies of 4-19F-phenylalanine-labeled intestinal fatty acid binding protein: evidence for conformational heterogeneity in the native state.
Li H; Frieden C
Biochemistry; 2005 Feb; 44(7):2369-77. PubMed ID: 15709749
[TBL] [Abstract][Full Text] [Related]
15. Protein promiscuity: drug resistance and native functions--HIV-1 case.
Fernández A; Tawfik DS; Berkhout B; Sanders R; Kloczkowski A; Sen T; Jernigan B
J Biomol Struct Dyn; 2005 Jun; 22(6):615-24. PubMed ID: 15842167
[TBL] [Abstract][Full Text] [Related]
16. Protein side-chain rearrangement in regions of point mutations.
Eyal E; Najmanovich R; Edelman M; Sobolev V
Proteins; 2003 Feb; 50(2):272-82. PubMed ID: 12486721
[TBL] [Abstract][Full Text] [Related]
17. Protein-protein docking with multiple residue conformations and residue substitutions.
Lorber DM; Udo MK; Shoichet BK
Protein Sci; 2002 Jun; 11(6):1393-408. PubMed ID: 12021438
[TBL] [Abstract][Full Text] [Related]
18. NMR relaxation studies of the role of conformational entropy in protein stability and ligand binding.
Stone MJ
Acc Chem Res; 2001 May; 34(5):379-88. PubMed ID: 11352716
[TBL] [Abstract][Full Text] [Related]
19. Side-chain flexibility in protein-ligand binding: the minimal rotation hypothesis.
Zavodszky MI; Kuhn LA
Protein Sci; 2005 Apr; 14(4):1104-14. PubMed ID: 15772311
[TBL] [Abstract][Full Text] [Related]
20. Ligand docking to proteins with discrete side-chain flexibility.
Leach AR
J Mol Biol; 1994 Jan; 235(1):345-56. PubMed ID: 8289255
[TBL] [Abstract][Full Text] [Related]
[Next] [New Search]
