BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

170 related articles for article (PubMed ID: 35313206)

  • 1. To compare the performance of prokaryotic taxonomy classifiers using curated 16S full-length rRNA sequences.
    Hung YM; Lyu WN; Tsai ML; Liu CL; Lai LC; Tsai MH; Chuang EY
    Comput Biol Med; 2022 Jun; 145():105416. PubMed ID: 35313206
    [TBL] [Abstract][Full Text] [Related]  

  • 2. Construction & assessment of a unified curated reference database for improving the taxonomic classification of bacteria using 16S rRNA sequence data.
    Agnihotry S; Sarangi AN; Aggarwal R
    Indian J Med Res; 2020 Jan; 151(1):93-103. PubMed ID: 32134020
    [TBL] [Abstract][Full Text] [Related]  

  • 3. 16S-ITGDB: An Integrated Database for Improving Species Classification of Prokaryotic 16S Ribosomal RNA Sequences.
    Hsieh YP; Hung YM; Tsai MH; Lai LC; Chuang EY
    Front Bioinform; 2022; 2():905489. PubMed ID: 36304264
    [TBL] [Abstract][Full Text] [Related]  

  • 4. GSR-DB: a manually curated and optimized taxonomical database for 16S rRNA amplicon analysis.
    Molano L-AG; Vega-Abellaneda S; Manichanh C
    mSystems; 2024 Feb; 9(2):e0095023. PubMed ID: 38189256
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Construction of habitat-specific training sets to achieve species-level assignment in 16S rRNA gene datasets.
    F Escapa I; Huang Y; Chen T; Lin M; Kokaras A; Dewhirst FE; Lemon KP
    Microbiome; 2020 May; 8(1):65. PubMed ID: 32414415
    [TBL] [Abstract][Full Text] [Related]  

  • 6. IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences.
    Murali A; Bhargava A; Wright ES
    Microbiome; 2018 Aug; 6(1):140. PubMed ID: 30092815
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Naive Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy.
    Wang Q; Garrity GM; Tiedje JM; Cole JR
    Appl Environ Microbiol; 2007 Aug; 73(16):5261-7. PubMed ID: 17586664
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Improving Species Level-taxonomic Assignment from 16S rRNA Sequencing Technologies.
    Bars-Cortina D; Moratalla-Navarro F; García-Serrano A; Mach N; Riobó-Mayo L; Vea-Barbany J; Rius-Sansalvador B; Murcia S; Obón-Santacana M; Moreno V
    Curr Protoc; 2023 Nov; 3(11):e930. PubMed ID: 37988265
    [TBL] [Abstract][Full Text] [Related]  

  • 9. 16S-FASAS: an integrated pipeline for synthetic full-length 16S rRNA gene sequencing data analysis.
    Zhang K; Lin R; Chang Y; Zhou Q; Zhang Z
    PeerJ; 2022; 10():e14043. PubMed ID: 36172503
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Improved taxonomic assignment of human intestinal 16S rRNA sequences by a dedicated reference database.
    Ritari J; Salojärvi J; Lahti L; de Vos WM
    BMC Genomics; 2015 Dec; 16():1056. PubMed ID: 26651617
    [TBL] [Abstract][Full Text] [Related]  

  • 11. TaxAss: Leveraging a Custom Freshwater Database Achieves Fine-Scale Taxonomic Resolution.
    Rohwer RR; Hamilton JJ; Newton RJ; McMahon KD
    mSphere; 2018 Sep; 3(5):. PubMed ID: 30185512
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Species-level resolution for the vaginal microbiota with short amplicons.
    Qing W; Shi Y; Chen R; Zou Y; Qi C; Zhang Y; Zhou Z; Li S; Hou Y; Zhou H; Chen M
    mSystems; 2024 Feb; 9(2):e0103923. PubMed ID: 38275296
    [TBL] [Abstract][Full Text] [Related]  

  • 13. The effect of training set on the classification of honey bee gut microbiota using the Naïve Bayesian Classifier.
    Newton IL; Roeselers G
    BMC Microbiol; 2012 Sep; 12():221. PubMed ID: 23013113
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Primer, Pipelines, Parameters: Issues in 16S rRNA Gene Sequencing.
    Abellan-Schneyder I; Matchado MS; Reitmeier S; Sommer A; Sewald Z; Baumbach J; List M; Neuhaus K
    mSphere; 2021 Feb; 6(1):. PubMed ID: 33627512
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Accurate taxonomy assignments from 16S rRNA sequences produced by highly parallel pyrosequencers.
    Liu Z; DeSantis TZ; Andersen GL; Knight R
    Nucleic Acids Res; 2008 Oct; 36(18):e120. PubMed ID: 18723574
    [TBL] [Abstract][Full Text] [Related]  

  • 16. DAIRYdb: a manually curated reference database for improved taxonomy annotation of 16S rRNA gene sequences from dairy products.
    Meola M; Rifa E; Shani N; Delbès C; Berthoud H; Chassard C
    BMC Genomics; 2019 Jul; 20(1):560. PubMed ID: 31286860
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Taxonomic classification of bacterial 16S rRNA genes using short sequencing reads: evaluation of effective study designs.
    Mizrahi-Man O; Davenport ER; Gilad Y
    PLoS One; 2013; 8(1):e53608. PubMed ID: 23308262
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Cyanoseq: A database of cyanobacterial 16S rRNA gene sequences with curated taxonomy.
    Lefler FW; Berthold DE; Laughinghouse HD
    J Phycol; 2023 Jun; 59(3):470-480. PubMed ID: 37026389
    [TBL] [Abstract][Full Text] [Related]  

  • 19. SPINGO: a rapid species-classifier for microbial amplicon sequences.
    Allard G; Ryan FJ; Jeffery IB; Claesson MJ
    BMC Bioinformatics; 2015 Oct; 16():324. PubMed ID: 26450747
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Microbial Identification Using rRNA Operon Region: Database and Tool for Metataxonomics with Long-Read Sequence.
    Seol D; Lim JS; Sung S; Lee YH; Jeong M; Cho S; Kwak W; Kim H
    Microbiol Spectr; 2022 Apr; 10(2):e0201721. PubMed ID: 35352997
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 9.