These tools will no longer be maintained as of December 31, 2024. Archived website can be found here. PubMed4Hh GitHub repository can be found here. Contact NLM Customer Service if you have questions.


BIOMARKERS

Molecular Biopsy of Human Tumors

- a resource for Precision Medicine *

145 related articles for article (PubMed ID: 35313540)

  • 1. A new approach for extracting information from protein dynamics.
    Liu J; Amaral LAN; Keten S
    ArXiv; 2022 Mar; ():. PubMed ID: 35313540
    [TBL] [Abstract][Full Text] [Related]  

  • 2. A new approach for extracting information from protein dynamics.
    Liu J; Amaral LAN; Keten S
    Proteins; 2023 Feb; 91(2):183-195. PubMed ID: 36094321
    [TBL] [Abstract][Full Text] [Related]  

  • 3. Macromolecular crowding: chemistry and physics meet biology (Ascona, Switzerland, 10-14 June 2012).
    Foffi G; Pastore A; Piazza F; Temussi PA
    Phys Biol; 2013 Aug; 10(4):040301. PubMed ID: 23912807
    [TBL] [Abstract][Full Text] [Related]  

  • 4. Dynamic Network Modeling of Allosteric Interactions and Communication Pathways in the SARS-CoV-2 Spike Trimer Mutants: Differential Modulation of Conformational Landscapes and Signal Transmission via Cascades of Regulatory Switches.
    Verkhivker GM; Di Paola L
    J Phys Chem B; 2021 Jan; 125(3):850-873. PubMed ID: 33448856
    [TBL] [Abstract][Full Text] [Related]  

  • 5. Molecular Simulations and Network Modeling Reveal an Allosteric Signaling in the SARS-CoV-2 Spike Proteins.
    Verkhivker GM
    J Proteome Res; 2020 Nov; 19(11):4587-4608. PubMed ID: 33006900
    [TBL] [Abstract][Full Text] [Related]  

  • 6. Frustration-driven allosteric regulation and signal transmission in the SARS-CoV-2 spike omicron trimer structures: a crosstalk of the omicron mutation sites allosterically regulates tradeoffs of protein stability and conformational adaptability.
    Verkhivker GM; Agajanian S; Kassab R; Krishnan K
    Phys Chem Chem Phys; 2022 Jul; 24(29):17723-17743. PubMed ID: 35839100
    [TBL] [Abstract][Full Text] [Related]  

  • 7. Allosteric Control of Structural Mimicry and Mutational Escape in the SARS-CoV-2 Spike Protein Complexes with the ACE2 Decoys and Miniprotein Inhibitors: A Network-Based Approach for Mutational Profiling of Binding and Signaling.
    Verkhivker GM; Agajanian S; Oztas DY; Gupta G
    J Chem Inf Model; 2021 Oct; 61(10):5172-5191. PubMed ID: 34551245
    [TBL] [Abstract][Full Text] [Related]  

  • 8. Integrated Biophysical Modeling of the SARS-CoV-2 Spike Protein Binding and Allosteric Interactions with Antibodies.
    Verkhivker GM; Di Paola L
    J Phys Chem B; 2021 May; 125(18):4596-4619. PubMed ID: 33929853
    [TBL] [Abstract][Full Text] [Related]  

  • 9. The Discovery of a Putative Allosteric Site in the SARS-CoV-2 Spike Protein Using an Integrated Structural/Dynamic Approach.
    Di Paola L; Hadi-Alijanvand H; Song X; Hu G; Giuliani A
    J Proteome Res; 2020 Nov; 19(11):4576-4586. PubMed ID: 32551648
    [TBL] [Abstract][Full Text] [Related]  

  • 10. Integrating Conformational Dynamics and Perturbation-Based Network Modeling for Mutational Profiling of Binding and Allostery in the SARS-CoV-2 Spike Variant Complexes with Antibodies: Balancing Local and Global Determinants of Mutational Escape Mechanisms.
    Verkhivker G; Agajanian S; Kassab R; Krishnan K
    Biomolecules; 2022 Jul; 12(7):. PubMed ID: 35883520
    [TBL] [Abstract][Full Text] [Related]  

  • 11. In Silico Study of Allosteric Communication Networks in GPCR Signaling Bias.
    Morales-Pastor A; Nerín-Fonz F; Aranda-García D; Dieguez-Eceolaza M; Medel-Lacruz B; Torrens-Fontanals M; Peralta-García A; Selent J
    Int J Mol Sci; 2022 Jul; 23(14):. PubMed ID: 35887157
    [TBL] [Abstract][Full Text] [Related]  

  • 12. Structural and Computational Studies of the SARS-CoV-2 Spike Protein Binding Mechanisms with Nanobodies: From Structure and Dynamics to Avidity-Driven Nanobody Engineering.
    Verkhivker G
    Int J Mol Sci; 2022 Mar; 23(6):. PubMed ID: 35328351
    [TBL] [Abstract][Full Text] [Related]  

  • 13. Molecular basis for higher affinity of SARS-CoV-2 spike RBD for human ACE2 receptor.
    Delgado JM; Duro N; Rogers DM; Tkatchenko A; Pandit SA; Varma S
    Proteins; 2021 Sep; 89(9):1134-1144. PubMed ID: 33864655
    [TBL] [Abstract][Full Text] [Related]  

  • 14. Coevolution, Dynamics and Allostery Conspire in Shaping Cooperative Binding and Signal Transmission of the SARS-CoV-2 Spike Protein with Human Angiotensin-Converting Enzyme 2.
    Verkhivker G
    Int J Mol Sci; 2020 Nov; 21(21):. PubMed ID: 33158276
    [TBL] [Abstract][Full Text] [Related]  

  • 15. Conformational Flexibility and Local Frustration in the Functional States of the SARS-CoV-2 Spike B.1.1.7 and B.1.351 Variants: Mutation-Induced Allosteric Modulation Mechanism of Functional Dynamics and Protein Stability.
    Verkhivker G
    Int J Mol Sci; 2022 Jan; 23(3):. PubMed ID: 35163572
    [TBL] [Abstract][Full Text] [Related]  

  • 16. Computational Insights into the Allosteric Effect and Dynamic Structural Features of the SARS-COV-2 Spike Protein.
    Xue Q; Liu X; Pan W; Zhang A; Fu J; Jiang G
    Chemistry; 2022 Jan; 28(6):e202104215. PubMed ID: 34962015
    [TBL] [Abstract][Full Text] [Related]  

  • 17. Transformations, Lineage Comparisons, and Analysis of Down-to-Up Protomer States of Variants of the SARS-CoV-2 Prefusion Spike Protein, Including the UK Variant B.1.1.7.
    Peters MH; Bastidas O; Kokron DS; Henze CE
    Microbiol Spectr; 2021 Sep; 9(1):e0003021. PubMed ID: 34346753
    [TBL] [Abstract][Full Text] [Related]  

  • 18. Biophysical Insight into the SARS-CoV2 Spike-ACE2 Interaction and Its Modulation by Hepcidin through a Multifaceted Computational Approach.
    Hadi-Alijanvand H; Di Paola L; Hu G; Leitner DM; Verkhivker GM; Sun P; Poudel H; Giuliani A
    ACS Omega; 2022 May; 7(20):17024-17042. PubMed ID: 35600142
    [TBL] [Abstract][Full Text] [Related]  

  • 19. A topological data analytic approach for discovering biophysical signatures in protein dynamics.
    Tang WS; da Silva GM; Kirveslahti H; Skeens E; Feng B; Sudijono T; Yang KK; Mukherjee S; Rubenstein B; Crawford L
    PLoS Comput Biol; 2022 May; 18(5):e1010045. PubMed ID: 35500014
    [TBL] [Abstract][Full Text] [Related]  

  • 20. Allosteric coupling in the bacterial adhesive protein FimH.
    Rodriguez VB; Kidd BA; Interlandi G; Tchesnokova V; Sokurenko EV; Thomas WE
    J Biol Chem; 2013 Aug; 288(33):24128-39. PubMed ID: 23821547
    [TBL] [Abstract][Full Text] [Related]  

    [Next]    [New Search]
    of 8.